Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SYNPCCN_RS03225 Genome accession   NC_017052
Coordinates   690989..691354 (-) Length   121 a.a.
NCBI ID   WP_010871830.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. PCC-N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 685989..696354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCCN_RS03215 (SYNPCCN_0624) - 687481..690342 (-) 2862 WP_010871828.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  SYNPCCN_RS03220 (SYNPCCN_0625) - 690489..690956 (-) 468 WP_010871829.1 CheW domain-containing protein -
  SYNPCCN_RS03225 (SYNPCCN_0626) pilH 690989..691354 (-) 366 WP_010871830.1 PleD family two-component system response regulator Machinery gene
  SYNPCCN_RS03230 (SYNPCCN_0627) - 691461..692582 (-) 1122 WP_020861489.1 response regulator -
  SYNPCCN_RS03240 (SYNPCCN_0628) - 693301..695301 (-) 2001 WP_010871832.1 ribonuclease catalytic domain-containing protein -
  SYNPCCN_RS03245 (SYNPCCN_0629) - 695380..695964 (-) 585 WP_010871833.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13684.93 Da        Isoelectric Point: 4.4247

>NTDB_id=35131 SYNPCCN_RS03225 WP_010871830.1 690989..691354(-) (pilH) [Synechocystis sp. PCC 6803 substr. PCC-N]
MKTVLVVEDTKSDQLLVQGLLKSMGTEAVICNNADEALEWLNKNTVPDLIMLDIVMPDISGYDLCRKIRGELALEDVPIV
FCSTKNEDYDRFWALRQGGNAYLIKPYSPIELMKTVKPYIS

Nucleotide


Download         Length: 366 bp        

>NTDB_id=35131 SYNPCCN_RS03225 WP_010871830.1 690989..691354(-) (pilH) [Synechocystis sp. PCC 6803 substr. PCC-N]
GTGAAAACTGTTTTAGTTGTGGAAGATACCAAGTCTGACCAGTTATTGGTTCAGGGGCTTTTAAAGTCCATGGGCACAGA
GGCTGTCATTTGTAACAATGCCGATGAAGCCCTGGAATGGTTAAACAAAAATACGGTGCCTGACCTAATTATGCTGGACA
TCGTTATGCCGGATATTAGTGGTTATGACCTATGTCGCAAAATTCGGGGAGAATTGGCCCTAGAAGATGTGCCCATTGTC
TTCTGTTCCACCAAAAATGAGGATTACGACCGTTTTTGGGCCCTGCGCCAGGGGGGTAATGCTTATTTGATTAAGCCCTA
TAGCCCCATTGAGTTGATGAAAACCGTTAAGCCCTATATTTCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

46.154

96.694

0.446