Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   GJV02_RS10165 Genome accession   NZ_CP046060
Coordinates   2155030..2155359 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 1811-18R001     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2150030..2160359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV02_RS10150 - 2150428..2151381 (+) 954 WP_003138480.1 UDP-glucose 4-epimerase family protein -
  GJV02_RS10155 - 2151381..2152397 (+) 1017 WP_003138482.1 MraY family glycosyltransferase -
  GJV02_RS10160 - 2152842..2154839 (+) 1998 WP_003138484.1 polysaccharide biosynthesis protein -
  GJV02_RS10165 comEA/comE1 2155030..2155359 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  GJV02_RS10175 - 2155576..2156772 (-) 1197 WP_031692592.1 amino acid aminotransferase -
  GJV02_RS10180 uvrB 2156960..2158972 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=349768 GJV02_RS10165 WP_003091430.1 2155030..2155359(+) (comEA/comE1) [Pseudomonas aeruginosa strain 1811-18R001]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=349768 GJV02_RS10165 WP_003091430.1 2155030..2155359(+) (comEA/comE1) [Pseudomonas aeruginosa strain 1811-18R001]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385