Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EUC41_RS18485 Genome accession   NZ_CP036344
Coordinates   3923025..3924470 (-) Length   481 a.a.
NCBI ID   WP_123786357.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain TB     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3918025..3929470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC41_RS18460 (EUC41_18355) - 3919095..3919766 (+) 672 WP_062685232.1 hypothetical protein -
  EUC41_RS18465 (EUC41_18360) bfr 3919846..3920322 (-) 477 WP_062685233.1 bacterioferritin -
  EUC41_RS18470 (EUC41_18365) - 3920688..3921602 (-) 915 WP_123786355.1 DMT family transporter -
  EUC41_RS18475 (EUC41_18370) - 3921732..3922589 (+) 858 WP_123786356.1 LysR substrate-binding domain-containing protein -
  EUC41_RS18480 (EUC41_18375) - 3922622..3922903 (-) 282 WP_062685235.1 (2Fe-2S)-binding protein -
  EUC41_RS18485 (EUC41_18380) rpoN/rpoN1 3923025..3924470 (-) 1446 WP_123786357.1 RNA polymerase factor sigma-54 Machinery gene
  EUC41_RS18490 (EUC41_18385) - 3924469..3925092 (+) 624 WP_123786358.1 hypothetical protein -
  EUC41_RS18495 (EUC41_18390) leuA 3925507..3927219 (+) 1713 WP_088147388.1 2-isopropylmalate synthase -
  EUC41_RS18500 (EUC41_18395) - 3927280..3928608 (-) 1329 WP_088147387.1 amidase -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52714.98 Da        Isoelectric Point: 4.7783

>NTDB_id=348088 EUC41_RS18485 WP_123786357.1 3923025..3924470(-) (rpoN/rpoN1) [Achromobacter denitrificans strain TB]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLAENPLLERDDEPQSAEEHTDSERESSVQDDEP
PLERETPAEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAEPRDVALAGLLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELKAALSLLQSFDPAGIGARDMAECLLLQLRNPDLSRLPEAADGAVLACARRICAEHLSLLATGNTARLCAA
VGCDEPTFRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQATLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QSQLQQARWMIRNVEQRFDTILRVAQAIVEHQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTEGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQAGA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=348088 EUC41_RS18485 WP_123786357.1 3923025..3924470(-) (rpoN/rpoN1) [Achromobacter denitrificans strain TB]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCTGGTCAGCATTTGACGCTGACGCCACAGCTGCA
GCAATCGATCCGATTGTTGCAGCTGTCCACGCTCGACCTTGAAGCCGAGATTTCGCAGGTGCTCGCGGAAAACCCGTTGC
TGGAACGGGACGACGAGCCCCAGTCGGCCGAGGAGCACACCGATTCCGAGCGCGAGTCCTCCGTGCAGGACGACGAGCCG
CCCCTCGAACGCGAGACGCCGGCCGAGGAAATGCCCGGGTCCGGCGGCGTGTACCCGGACGATGATTCCTCCCTGCCCGA
GGCGGCGCGGCCGGACACGCTGCGCGAGCATCTGTTGGGCCAGCTGGTGCTGACGCGGGCGGAACCCCGCGACGTGGCCC
TGGCGGGCCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGATCGCCGCTGGAGGAGATCCTGGGCTGGCTGCCG
GCCGAAATGGAGCCGGACCTCGACGAACTGAAGGCGGCCCTGTCCCTGCTGCAGTCGTTCGATCCGGCCGGCATCGGCGC
GCGCGACATGGCCGAATGCCTGCTGTTGCAACTGCGCAACCCCGACCTCTCGCGCCTGCCCGAGGCCGCGGACGGCGCGG
TCCTGGCCTGTGCGCGCCGCATCTGCGCCGAGCACCTGTCCCTGCTGGCCACCGGCAATACCGCCCGGCTGTGCGCCGCC
GTGGGCTGCGACGAGCCGACCTTCCGGGCGGCCCATGCCCTGATCCTGCGCCTGGAGCCCCGGCCGGGGCGGGCCTGGAC
CGTGCCCGCCGCCGACTACGCGGTGCCCGACGTCATCGTGCGCAAGACCCGCCGCGGCTGGCAGGCCACGCTGAACAGCG
CCGCCGTGCCCCGGCTTCAGATCAACGGGCTGTATGCCCAGATGCTGGGCAACCAGAAGGAATCCGCGCACGCCGGCCTG
CAGTCGCAGCTGCAGCAGGCCCGCTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCCCAGGC
CATCGTGGAACACCAGACGGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGCTCATCCTGAAGGACATCGCGGGCG
AGCTGGGTTTGCATGAATCCACGATTTCACGGGCCACAACGCAGAAGTACATGCTCACTCCGTTCGGCACACTGGAGCTC
AAGCGCTTCTTCGGCACCGGCGTGTCCACCGAGGGCGGGGACGCCACCTCGGCCACCGCCGTGCAAACGTTCATCCGCCA
GATGGTGGCGGAAGAGAACCGCGCCAAGCCGCTGTCGGACAGCCAGATCATGCAAAAGCTGGCCGATCAGGGGATAGTCA
TCGCCCGCCGGACGGTGGCAAAGTACCGCGAAGCGCTGCGAATCGCCCCGGCCGCGCTGCGCAAGGCGCAGGCCGGCGCC
CGCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.901

100

0.522

Multiple sequence alignment