Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   GII76_RS02770 Genome accession   NZ_CP045826
Coordinates   531375..531809 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain 73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 526375..536809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII76_RS02740 (GII76_02740) ydaD 527024..527884 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  GII76_RS02745 (GII76_02745) lyxE 527900..528403 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  GII76_RS02750 (GII76_02750) ydaF 528489..529040 (+) 552 WP_038427389.1 GNAT family protein -
  GII76_RS02755 (GII76_02755) ydaG 529118..529540 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  GII76_RS02760 (GII76_02760) amj 530046..530855 (+) 810 WP_128471717.1 lipid II flippase Amj -
  GII76_RS02765 (GII76_02765) ydzA 530900..531190 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  GII76_RS02770 (GII76_02770) lrpC 531375..531809 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  GII76_RS02775 (GII76_02775) topB 531874..534057 (+) 2184 WP_033883715.1 DNA topoisomerase III -
  GII76_RS02780 (GII76_02780) ephJ 534259..535347 (+) 1089 WP_038427395.1 hypothetical protein -
  GII76_RS02785 (GII76_02785) epsK 535328..536179 (+) 852 WP_029726556.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=347974 GII76_RS02770 WP_003246585.1 531375..531809(+) (lrpC) [Bacillus subtilis strain 73]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=347974 GII76_RS02770 WP_003246585.1 531375..531809(+) (lrpC) [Bacillus subtilis strain 73]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1