Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   GII78_RS15165 Genome accession   NZ_CP045824
Coordinates   2870592..2871287 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2865592..2876287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS15140 (GII78_15140) minD 2866528..2867334 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  GII78_RS15145 (GII78_15145) minC 2867336..2868016 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  GII78_RS15150 (GII78_15150) mreD 2868069..2868587 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  GII78_RS15155 (GII78_15155) mreC 2868584..2869456 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  GII78_RS15160 (GII78_15160) mreB 2869487..2870500 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  GII78_RS15165 (GII78_15165) ysxA/radC 2870592..2871287 (-) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  GII78_RS15170 (GII78_15170) maf 2871324..2871893 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  GII78_RS15175 (GII78_15175) spoIIB 2872046..2873041 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  GII78_RS15180 (GII78_15180) comC 2873175..2873921 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  GII78_RS15185 (GII78_15185) folC 2874063..2875355 (-) 1293 WP_038427817.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=347757 GII78_RS15165 WP_015251546.1 2870592..2871287(-) (ysxA/radC) [Bacillus subtilis strain MB8_B10]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=347757 GII78_RS15165 WP_015251546.1 2870592..2871287(-) (ysxA/radC) [Bacillus subtilis strain MB8_B10]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCACAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAGGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424