Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GII81_RS19935 Genome accession   NZ_CP045820
Coordinates   3825010..3826143 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain MB9_B1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3820010..3831143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII81_RS19895 (GII81_19895) ywnA 3820179..3820580 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  GII81_RS19900 (GII81_19900) ureC 3820715..3822424 (-) 1710 WP_029726053.1 urease subunit alpha -
  GII81_RS19905 (GII81_19905) ureB 3822421..3822795 (-) 375 WP_029726054.1 urease subunit beta -
  GII81_RS19910 (GII81_19910) ureA 3822792..3823109 (-) 318 WP_003227724.1 urease subunit gamma -
  GII81_RS19915 (GII81_19915) - 3823300..3823460 (-) 161 Protein_3896 hypothetical protein -
  GII81_RS22595 - 3823732..3823900 (-) 169 Protein_3897 urea ABC transporter substrate-binding protein -
  GII81_RS19925 (GII81_19925) csbD 3824114..3824302 (-) 189 WP_003227718.1 stress response protein CsbD -
  GII81_RS19930 (GII81_19930) - 3824375..3824854 (-) 480 WP_003244390.1 hypothetical protein -
  GII81_RS19935 (GII81_19935) rapC 3825010..3826143 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  GII81_RS19940 (GII81_19940) moaA 3826335..3827360 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  GII81_RS19945 (GII81_19945) fdhD 3827376..3828164 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  GII81_RS19950 (GII81_19950) - 3828411..3828572 (-) 162 WP_003227706.1 hypothetical protein -
  GII81_RS19955 (GII81_19955) ywmD 3828667..3829341 (-) 675 WP_029726055.1 VWA domain-containing protein -
  GII81_RS19960 (GII81_19960) - 3829394..3829534 (-) 141 WP_003227702.1 hypothetical protein -
  GII81_RS19965 (GII81_19965) ywmC 3829665..3830348 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=347323 GII81_RS19935 WP_003227715.1 3825010..3826143(-) (rapC) [Bacillus subtilis strain MB9_B1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=347323 GII81_RS19935 WP_003227715.1 3825010..3826143(-) (rapC) [Bacillus subtilis strain MB9_B1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424