Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   GII85_RS05675 Genome accession   NZ_CP045817
Coordinates   1110321..1113713 (+) Length   1130 a.a.
NCBI ID   WP_041851010.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1105321..1118713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS05665 (GII85_05665) addA 1105379..1109077 (+) 3699 WP_041851012.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GII85_RS05670 (GII85_05670) sbcD 1109149..1110324 (+) 1176 WP_041851011.1 exonuclease subunit SbcD -
  GII85_RS05675 (GII85_05675) sbcC 1110321..1113713 (+) 3393 WP_041851010.1 exonuclease subunit SbcC Machinery gene
  GII85_RS05680 (GII85_05680) hlpB 1113727..1114029 (+) 303 WP_015252406.1 HNH nuclease-like protein HlpB -
  GII85_RS05685 (GII85_05685) gerPF 1114065..1114283 (-) 219 WP_003233096.1 spore germination protein -
  GII85_RS05690 (GII85_05690) gerPE 1114315..1114716 (-) 402 WP_041851009.1 spore germination protein GerPE -
  GII85_RS05695 (GII85_05695) gerPD 1114716..1114892 (-) 177 WP_014476380.1 spore germination protein GerPD -
  GII85_RS05700 (GII85_05700) gerPC 1114889..1115506 (-) 618 WP_014476381.1 spore germination protein GerPC -
  GII85_RS05705 (GII85_05705) gerPB 1115530..1115763 (-) 234 WP_003233090.1 spore germination protein GerPB -
  GII85_RS05710 (GII85_05710) gerPA 1115778..1115999 (-) 222 WP_003233088.1 spore germination protein -
  GII85_RS05715 (GII85_05715) yisI 1116421..1116591 (-) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  GII85_RS05720 (GII85_05720) yisJ 1116737..1117660 (-) 924 WP_041851008.1 CotH kinase family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128940.56 Da        Isoelectric Point: 5.3892

>NTDB_id=346768 GII85_RS05675 WP_041851010.1 1110321..1113713(+) (sbcC) [Bacillus subtilis strain P5_B1]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNQAEDTLSVSFTF
ALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKALEQAEARLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSAYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADR
TAFFQQKHEEYEAWRQHKSEKEPELLTEQEQLSRLQEIEIKLSEAKQEKERKKTELQQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSNERKSCHQAAEMALRIRQTEEQIKKEKKRSEELNLVLQKMNEEKNTLVQKTEAEENNIIQAY
EAVQTVYHLVCETERSLTRMTEEARKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKRTDVLLTEAAVLSQEILSAKITLEEQSARFIEQCPFLQTIQAQNLEAAASFEHHPVYEAFETAKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQKSIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRELGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSIQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQT
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=346768 GII85_RS05675 WP_041851010.1 1110321..1113713(+) (sbcC) [Bacillus subtilis strain P5_B1]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCTGGTGTTTTCGGCATTTTCGGCCCGACAGGAAGCGGTAAATCCTCTATTCTCGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGTATCTTAAACCAGGCGGAAGATACGCTGTCTGTTTCCTTTACCTTT
GCGCTTCAGACGAATCACCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTAAAAACGGC
ACTTTGCCGCTTCATTGAAATCAAGGACGAGCATACGGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTTGAGG
AACTCTTAGGGCTGACGATCGACGATTTTACGAGAGCGGTGGTGTTGCCCCAAGGGAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCCGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTTGAGCAGGCTGAAAAGGCTCTCGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCGCTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAGCAGCTCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAACAAGCTGAAAAGGAACAAACGCTAGCCCAAAAGGATTTAGCAGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTAAC
TGAGCAGGAACAGCTTTCACGTTTGCAGGAAATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGAAAGAGCGCAAAAAGA
CTGAACTCCAGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTGGAGACGGTAACAGACCGCCTGACGCGGGGA
CAAAACAGACAGACAGAATTGAAACAGCAGCTCAAATCCCTGCAGGTGACATCCAATGAGCGAAAAAGCTGCCATCAGGC
CGCAGAAATGGCATTGCGCATCAGACAAACCGAGGAGCAAATCAAAAAAGAGAAAAAACGAAGTGAAGAATTGAACCTCG
TGCTGCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCGGAAGAAAACAACATCATTCAGGCATAT
GAGGCTGTACAAACTGTGTACCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGGCTAGAAAGAG
TCAACACACGCTTCACTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GAAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCAGTACATGAAACGTATGAAGCCGACAGCCAT
CTTGAAGAGGACATCAAACGGACAGATGTGTTATTGACGGAAGCTGCAGTTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TACGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCACAGAACCTTGAAGCGG
CAGCTTCCTTTGAACATCATCCGGTGTATGAAGCATTTGAAACTGCCAAATTTGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATCGGCGCCTATCAGGAATCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCTGACCGTATTGAAAGCATCATCAGCGAGCTTCAATCCTCAATGGACAGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGAAATCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCG
GGAATTGGGACACCGGCTTGAGCGGGAAAAGCTGGAGCTTCATTATGCGGCTGAACGCATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCGCTCTATCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAGGCGAAAAGCCGCGCTTC
GGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGAAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCCGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATAGAGGAAAAAGGCGCGG
CCGCAAAAGCACTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGACG
CATATCGACAGGCTGGATAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCCTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCAGAAGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTAAGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATCCAGCTTCGCGGGGAATACCCGCTTCAGTTCTTTTTCTTAGACGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCCTTGGAAAAACTTCAGTCAGACAATCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATTGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)

AAA domain (AAA_23)

(6-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

98.319

100

0.983

Multiple sequence alignment