Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   GH773_RS01165 Genome accession   NZ_CP045791
Coordinates   232634..232945 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   -
Organism   Campylobacter coli strain CFSAN032805     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227634..237945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH773_RS01145 (GH773_01145) ctsE 228501..230063 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  GH773_RS01150 (GH773_01150) ctsX 230056..230652 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  GH773_RS01155 (GH773_01155) ctsP 230649..231245 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GH773_RS01160 (GH773_01160) ctsD 231238..232656 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GH773_RS01165 (GH773_01165) ctsR 232634..232945 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  GH773_RS01170 (GH773_01170) nifJ 232969..236529 (-) 3561 WP_002794518.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  GH773_RS01175 (GH773_01175) - 236633..237271 (-) 639 WP_002794520.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=346001 GH773_RS01165 WP_002779316.1 232634..232945(-) (ctsR) [Campylobacter coli strain CFSAN032805]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=346001 GH773_RS01165 WP_002779316.1 232634..232945(-) (ctsR) [Campylobacter coli strain CFSAN032805]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment