Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ATH_RS09315 Genome accession   NZ_CP035926
Coordinates   1804916..1805965 (+) Length   349 a.a.
NCBI ID   WP_066172549.1    Uniprot ID   -
Organism   Aliarcobacter thereius LMG 24486     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799916..1810965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATH_RS09285 (ATH_1860) pseH 1800091..1800705 (-) 615 WP_083196013.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  ATH_RS09290 (ATH_1861) pseG 1800729..1801673 (-) 945 WP_066172536.1 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase -
  ATH_RS09295 (ATH_1862) pseF 1801675..1802385 (-) 711 WP_066172539.1 pseudaminic acid cytidylyltransferase -
  ATH_RS09300 (ATH_1863) pseC 1802378..1803544 (-) 1167 WP_066172542.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ATH_RS09305 (ATH_1864) pseB 1803541..1804533 (-) 993 WP_066172544.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ATH_RS09310 (ATH_1865) - 1804640..1804828 (+) 189 WP_066172545.1 hypothetical protein -
  ATH_RS09315 (ATH_1866) recA 1804916..1805965 (+) 1050 WP_066172549.1 recombinase RecA Machinery gene
  ATH_RS09320 (ATH_1867) - 1806019..1807365 (-) 1347 WP_066172552.1 sodium-dependent transporter -
  ATH_RS09325 (ATH_1868) nfo 1807566..1808411 (+) 846 WP_066178214.1 deoxyribonuclease IV -
  ATH_RS09330 (ATH_1869) - 1808413..1809603 (+) 1191 WP_066172559.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37531.92 Da        Isoelectric Point: 4.6822

>NTDB_id=345075 ATH_RS09315 WP_066172549.1 1804916..1805965(+) (recA) [Aliarcobacter thereius LMG 24486]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDIDNLLVSQPDFGEQALEILETVIRSGAVDLVVIDSVAALTPKVEIDGDMDD
MQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDTKIGQGRENSKIFLRDNPEIAKEIE
DKILNSMGINDTIITGSDDEDSSSDSLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=345075 ATH_RS09315 WP_066172549.1 1804916..1805965(+) (recA) [Aliarcobacter thereius LMG 24486]
ATGGATGAAAATCAAAAAAAATCACTAGAATTAGCAATTAAACAAATAGACAAAGCTTTTGGAAAAGGTACTTTAATAAG
ACTTGGAGATAAAGAAGTTATTCCAACTGAAGCTATTAGTACAGGTTCTTTAGGACTTGATTTGGCTTTAGGTGTTGGTG
GACTTCCAAAAGGAAGAGTTATAGAAATTTATGGACCTGAAAGTTCAGGAAAAACAACTCTTACTTTACATGCTATTGCA
GAGGCACAAAAAGCTGGTGGAGTTTGCGCTTTTATAGATGCTGAACATGCTTTAGATGTAAAATATGCAAAAGATATTGG
TGTTGATATTGATAATTTACTTGTTTCTCAGCCAGATTTTGGAGAACAAGCTTTAGAAATTCTTGAAACTGTTATTAGAA
GTGGAGCTGTTGATTTAGTTGTTATTGACTCTGTTGCAGCACTTACACCAAAAGTTGAAATAGATGGTGATATGGATGAT
ATGCAAGTTGGAGTTCAAGCAAGACTTATGAGTAAAGCTTTAAGAAAAGTTACTGGTCTTTTAAGCAAAATGAACTGTAC
AGTTATTTTTATTAATCAAATAAGAATGAAAATTGGAATGACTGGTTATGGAAGCCCTGAAACAACAACTGGTGGAAATG
CACTTAAATTTTACTCTTCAGTTAGACTAGATATTAGAAGAATTGCTACACTTAAACAAGGTGAAAATTCTATTGGAAAT
AGAGTTAAAGTTAAAGTTGTAAAAAATAAAGTAGCTGCTCCATTTAAACAAGCTGAGTTTGATATTATGTTTGGAGAAGG
AATTTCTAAAACAGGTGAACTTGTAGATTATGGAGTTAAACTTGATATTGTTGATAAAGCTGGAGCTTGGTTTAGCTATG
GTGATACAAAAATTGGTCAAGGAAGAGAAAACTCTAAAATATTCTTAAGAGATAATCCAGAAATTGCAAAAGAGATAGAA
GATAAAATCTTAAATTCTATGGGAATAAATGATACAATTATCACTGGAAGTGATGATGAAGATAGTTCTTCTGACTCTTT
AGATGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.66

97.708

0.739
  recA Helicobacter pylori strain NCTC11637

74.336

97.135

0.722
  recA Helicobacter pylori 26695

74.041

97.135

0.719
  recA Acinetobacter baylyi ADP1

61.891

100

0.619
  recA Acinetobacter baumannii D1279779

66.254

92.55

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

94.269

0.61
  recA Neisseria gonorrhoeae strain FA1090

61.877

97.708

0.605
  recA Neisseria gonorrhoeae MS11

61.877

97.708

0.605
  recA Neisseria gonorrhoeae MS11

61.877

97.708

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.057

99.713

0.599
  recA Vibrio cholerae strain A1552

60.057

99.713

0.599
  recA Glaesserella parasuis strain SC1401

60.174

98.567

0.593
  recA Ralstonia pseudosolanacearum GMI1000

64.762

90.258

0.585
  recA Pseudomonas stutzeri DSM 10701

62.539

92.55

0.579
  recA Streptococcus mitis NCTC 12261

56.695

100

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

59.271

94.269

0.559
  recA Streptococcus pneumoniae TIGR4

56.522

98.854

0.559
  recA Streptococcus pneumoniae Rx1

56.522

98.854

0.559
  recA Streptococcus pneumoniae D39

56.522

98.854

0.559
  recA Streptococcus pneumoniae R6

56.522

98.854

0.559
  recA Streptococcus pyogenes NZ131

58.485

94.556

0.553
  recA Streptococcus mitis SK321

58.308

94.842

0.553
  recA Streptococcus mutans UA159

58.308

94.842

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

57.879

94.556

0.547
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.269

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.362

93.41

0.536

Multiple sequence alignment