Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   FPL20_RS00950 Genome accession   NZ_CP045478
Coordinates   162791..163225 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain JD-014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157791..168225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS00935 (FPL20_GE00175) epsK 158420..159271 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  FPL20_RS00940 (FPL20_GE00176) ephJ 159252..160340 (-) 1089 WP_003246551.1 lipoprotein -
  FPL20_RS00945 (FPL20_GE00177) topB 160543..162726 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  FPL20_RS00950 (FPL20_GE00178) lrpC 162791..163225 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  FPL20_RS00955 (FPL20_GE00179) ydzA 163410..163700 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  FPL20_RS00960 (FPL20_GE00180) amj 163744..164553 (-) 810 WP_003234394.1 lipid II flippase Amj -
  FPL20_RS00965 (FPL20_GE00181) ydaG 165059..165481 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  FPL20_RS00970 (FPL20_GE00182) ydaF 165559..166110 (-) 552 WP_003246691.1 GNAT family N-acetyltransferase -
  FPL20_RS00975 (FPL20_GE00183) lyxE 166196..166699 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  FPL20_RS00980 (FPL20_GE00184) ydaD 166715..167575 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=344635 FPL20_RS00950 WP_003246585.1 162791..163225(-) (lrpC) [Bacillus subtilis strain JD-014]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=344635 FPL20_RS00950 WP_003246585.1 162791..163225(-) (lrpC) [Bacillus subtilis strain JD-014]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1