Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   FSA28_RS07170 Genome accession   NZ_CP044495
Coordinates   1450886..1454128 (-) Length   1080 a.a.
NCBI ID   WP_002291095.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1445886..1459128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS07160 (FSA28_1200) lacR 1446278..1447033 (-) 756 WP_002265225.1 transcriptional regulator LacR -
  FSA28_RS07165 (FSA28_1201) rexA 1447258..1450896 (-) 3639 WP_002291099.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FSA28_RS07170 (FSA28_1202) rexB 1450886..1454128 (-) 3243 WP_002291095.1 ATP-dependent nuclease subunit B Machinery gene
  FSA28_RS07175 (FSA28_1203) - 1454997..1455242 (-) 246 WP_002262921.1 SemiSWEET family transporter -
  FSA28_RS07180 (FSA28_1204) - 1455417..1455743 (-) 327 WP_002270187.1 hypothetical protein -
  FSA28_RS10565 - 1456136..1456225 (-) 90 WP_253676489.1 hypothetical protein -
  FSA28_RS07190 (FSA28_1205) - 1456591..1457871 (-) 1281 WP_002291441.1 MATE family efflux transporter -
  FSA28_RS07195 (FSA28_1206) - 1457868..1458191 (-) 324 WP_002265227.1 PqqD family protein -
  FSA28_RS10440 (FSA28_1207) - 1458188..1458973 (-) 786 Protein_1347 radical SAM protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 123923.93 Da        Isoelectric Point: 5.9262

>NTDB_id=343034 FSA28_RS07170 WP_002291095.1 1450886..1454128(-) (rexB) [Streptococcus mutans strain UA140]
MKLLYTDIPYNITEILAEEAQIAAKAGKRVFYIAPNSLSFEKERAVLETLPERASFAITITRFEQMARYFVLNDIHQGET
IDDNGLAMVFYRVLSSFSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELDQLNSAEKQEDLIKIFTEVETILSA
GHFDNQSKIAFFAQQIKFGHLDTALQDLTIVIDGFTRFSAEEENLIGLLHEKGVDIIIGTYISQKAYRSTFSNGNVYQAS
LDFIRGLAGKFQTKPEYVVSKQEALPAFTKLSQLFESRHDFSDSQLVLTDKDKEHVTIWDVINQKEEVEHVAKSIRRKLY
EGHRYKDILVLLGDVDAYKLQIGKIFDKYEIPYYFGKAESMSSHPLVHFVDSLERVKRYNFRAEDVMNLLKSGLYGKIRQ
NQLDKLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELVKIQAQKGDSILQKLTNFLEAISLTNNF
SKLIQGVNDIEQEKNEQVWKTFTVILEQFHTIFGQEKMKLADFLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNK
FVFALGMTQSHFPKIVQNKSLISDEERAKINEATPDNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDN
TSSYLLELQDMGVPVVEKGRNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSVAVRYLRQKLAKEGLTIPE
VNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLYFLQYILGLQELETIHPDARNHGTYLHRVFELVMQDQST
DDFDSKLNRAIDITNHEDSFHLVYNEDEESRYALGILEDIARSTATILKGDNPVQAESEEEAFELMLDQAVKIRGVIDRI
DRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALRSCKNLNDTDKIFGAMYLHMQEPKTDLANMKSIEKIPETV
HKNLSYKGLFLEDEKAHLANGKYHLHDAVYSQKEVDLLLDYNKRLYRSAAKQIRKGNFLINPYSQDGKSVQGEQLKAITH
FEADRHMPYARKLSQLSRKEKRQGFLALMQSKKEEEGNDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=343034 FSA28_RS07170 WP_002291095.1 1450886..1454128(-) (rexB) [Streptococcus mutans strain UA140]
ATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCCGG
CAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGG
CTTCCTTTGCTATTACCATTACGCGTTTTGAGCAAATGGCACGCTATTTTGTTTTAAATGATATTCATCAGGGCGAAACC
ATTGATGATAATGGACTTGCCATGGTTTTTTATCGTGTTTTATCCAGTTTTTCAGACCAAGATTTGCGTGTTTTTGGGCG
TCTTAAGCAAGATGCTCATTTTATCAATCAATTGGTGGATTTGTATAAGGAACTCAAGGCTTCTAATCTGACTGTCTTAG
AATTAGATCAGCTGAATTCGGCTGAAAAGCAGGAAGATTTGATTAAGATTTTTACAGAGGTTGAAACCATTTTAAGTGCT
GGCCATTTTGATAATCAAAGCAAGATTGCCTTCTTTGCACAACAGATCAAATTCGGTCATTTAGATACGGCTTTGCAGGA
TTTGACAATTGTTATTGATGGTTTCACACGTTTTTCTGCTGAAGAAGAAAACCTGATAGGACTGTTACATGAAAAAGGTG
TTGACATTATCATTGGGACTTATATTAGTCAAAAAGCTTATCGTTCAACTTTTTCGAATGGGAATGTCTATCAGGCTAGC
CTTGATTTCATTCGTGGTTTGGCTGGTAAATTTCAAACCAAACCAGAATATGTGGTATCAAAGCAAGAAGCTTTGCCTGC
TTTTACCAAACTTTCTCAGCTATTTGAAAGTCGTCATGATTTTTCGGACAGTCAGCTGGTCTTGACAGATAAGGACAAGG
AACATGTAACTATCTGGGATGTCATTAATCAAAAAGAAGAAGTGGAACATGTTGCTAAGAGCATTCGCCGGAAACTCTAT
GAAGGTCATCGTTACAAGGATATTTTGGTCCTTCTTGGGGATGTGGATGCCTATAAACTGCAGATTGGCAAGATTTTTGA
TAAGTATGAAATTCCCTATTATTTTGGCAAAGCGGAGTCCATGAGTTCGCACCCGCTAGTTCATTTTGTGGATTCTTTGG
AGCGGGTTAAACGTTATAATTTTCGTGCTGAGGATGTCATGAATCTGCTCAAATCAGGCCTATATGGCAAAATCAGGCAA
AATCAGTTAGATAAATTGGAGCAGTATGTCATTTATGCTGATATTAAAGGAAAAACAAAGTTCTTTAAGGACTTTACGCT
AGATAATCATGGGCAATTTGATCTAAAAGCCTTAAATAAACTGCGGGCAGAAGTCATGTCACCTTTACAAGAGCTGGTTA
AAATACAGGCTCAAAAGGGAGACAGTATCCTGCAAAAATTGACCAACTTTTTAGAAGCCATTTCTTTAACGAATAATTTT
TCAAAATTAATCCAAGGTGTCAATGATATTGAGCAGGAAAAGAACGAGCAAGTTTGGAAAACTTTTACGGTTATTTTAGA
GCAATTTCATACGATTTTTGGACAAGAAAAAATGAAGTTGGCTGATTTTCTGGCACTCTTACGCAGCGGCATGCTAGCGG
CTGATTATCGGACGGTTCCTGCTAGTGTTGATGTTGTGACAGTTAAGTCTTATGATTTGGTGGAGCCCCATAGCAATAAA
TTTGTTTTTGCTCTGGGAATGACCCAGTCTCATTTTCCTAAAATTGTCCAAAATAAGAGTCTTATTTCGGATGAAGAACG
TGCAAAAATCAATGAAGCAACTCCTGACAATCGTCGTTTTGATATTGTCACTAAGGAAAATCTCAAGAAAAATCATTTCA
CCGCCCTGTCACTCTTCAATGCGGCCACTCAGGAATTGGTCTTAACCTTGCCGCAGATTTTAAACGAGGCAGAGGACAAC
ACCTCCTCCTATTTGCTTGAATTGCAAGATATGGGAGTGCCAGTTGTGGAAAAGGGGCGCAATCGTTTAGCTGCGGATCC
AGAAGATATTGGCAATTACAAGGCGCTTTTGTCGCGTGTGATTGAACTTAACCGCTCTGCTATTGACCAAGAATTATCTA
AAGAAGAGCAGACCTTTTGGTCAGTTGCTGTTCGCTATTTACGCCAAAAATTGGCAAAAGAAGGACTTACGATTCCTGAA
GTGAACGATAAGATGCAGACCAAGCAGGTTGCTGCAGAGGTTATGGCAGCACGTTTTCCAATAGATCAACCTTTAAATCT
ATCATCGTCTGCCCTGACAACTTTTTACAATAATCAGTATCTCTATTTCCTTCAATATATCCTTGGCTTGCAAGAGCTTG
AAACGATTCATCCTGATGCTAGAAATCATGGGACTTATTTGCACCGCGTGTTTGAATTGGTTATGCAAGATCAATCTACT
GATGATTTTGACAGTAAATTAAATCGTGCCATTGATATAACCAACCATGAGGATAGCTTTCACTTGGTTTATAATGAAGA
TGAGGAAAGTCGCTATGCTTTGGGTATTTTAGAAGATATTGCTCGTAGTACAGCTACCATTTTAAAAGGGGATAATCCTG
TTCAGGCAGAAAGTGAAGAAGAAGCCTTTGAGTTAATGCTGGATCAGGCTGTTAAAATCAGAGGGGTTATTGATCGCATT
GATCGCTTGTCAGATGGCAGTTTAGGAATTGTTGATTATAAATCAAGTAAAAATACCTTTGATCTGCAAAAATTTTACAA
TGGACTCAGTCCGCAGTTAGTGACTTATATAGAAGCTCTTCGGTCTTGTAAAAATTTGAATGATACAGATAAGATTTTTG
GAGCCATGTATCTTCATATGCAGGAACCTAAAACTGATTTAGCCAATATGAAATCCATCGAAAAAATTCCGGAAACGGTT
CATAAGAATTTAAGTTATAAGGGACTCTTTTTAGAAGATGAAAAAGCACATTTGGCTAATGGGAAATACCATTTGCATGA
TGCTGTCTATAGTCAAAAAGAAGTTGATTTGCTGCTTGATTATAATAAAAGACTCTATCGCAGTGCCGCAAAGCAAATCA
GAAAAGGAAACTTTCTCATTAACCCCTACAGTCAGGATGGCAAATCTGTTCAGGGAGAACAGCTGAAGGCTATTACACAT
TTTGAAGCAGATCGCCACATGCCTTATGCTCGTAAACTTTCTCAGCTGTCACGCAAAGAAAAACGTCAGGGTTTCTTGGC
GTTAATGCAGTCTAAAAAAGAGGAGGAAGGCAATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.548

99.352

0.443