Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EUB48_RS01295 Genome accession   NZ_CP035503
Coordinates   263076..264668 (+) Length   530 a.a.
NCBI ID   WP_142817193.1    Uniprot ID   A0A515D6P2
Organism   Rhodoferax sediminis strain CHu59-6-5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 258076..269668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUB48_RS01270 (EUB48_01270) argS 258281..259978 (+) 1698 WP_142817187.1 arginine--tRNA ligase -
  EUB48_RS01275 (EUB48_01275) - 259987..260640 (+) 654 WP_142817189.1 SPOR domain-containing protein -
  EUB48_RS01280 (EUB48_01280) - 260729..261379 (+) 651 WP_077561888.1 thiol:disulfide interchange protein DsbA/DsbL -
  EUB48_RS01285 (EUB48_01285) lptA 261489..262130 (+) 642 WP_142817191.1 lipopolysaccharide transport periplasmic protein LptA -
  EUB48_RS01290 (EUB48_01290) lptB 262127..262921 (+) 795 WP_244618294.1 LPS export ABC transporter ATP-binding protein -
  EUB48_RS01295 (EUB48_01295) rpoN/rpoN1 263076..264668 (+) 1593 WP_142817193.1 RNA polymerase factor sigma-54 Machinery gene
  EUB48_RS01300 (EUB48_01300) - 264665..265981 (+) 1317 WP_142817195.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  EUB48_RS01305 (EUB48_01305) - 266034..266444 (+) 411 WP_142817196.1 putative toxin-antitoxin system toxin component, PIN family -
  EUB48_RS01310 (EUB48_01310) - 266567..267400 (+) 834 WP_142817198.1 YecA family protein -
  EUB48_RS01315 (EUB48_01315) - 267410..267850 (-) 441 WP_142817200.1 CZB domain-containing protein -
  EUB48_RS01320 (EUB48_01320) - 268191..269600 (+) 1410 WP_142817202.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58833.23 Da        Isoelectric Point: 4.8974

>NTDB_id=342885 EUB48_RS01295 WP_142817193.1 263076..264668(+) (rpoN/rpoN1) [Rhodoferax sediminis strain CHu59-6-5]
MKQGLSLRISQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDDNPFLEVAELEAPREEFGLAQSDTRVREDDRDTDFATN
SVAGSQDDMRATAQNDAEFPLSGRDEEQSWDGDGTSEVRPDDSEWGGDAPARSNNLGDADAMDATELAGSQESLQSHLHR
QALSLRLSQEDRAALHFLIESLNDDGYLEDTLQSLAEGLAGTDEAQVEELVQCFTVALSLLQHLEPTGVGARHLGECLAL
QLRALQDFDHGDPARQEVVEVALRMCAQPMDLLARRDVRRLVQLCGATEAQVKAAMALIGRLEPKPGRRFVQVERNIVVP
DVIVTNVGRGGQPKFRVQLNPDVMPRLRVHDIYANALKQHKSGGRDASNHAALQQRLQEARWFIKNIQQRFDTILRVANA
IVERQKSFFVHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPYGTFELKYFFGSGLGTETGGNASSTAVRALIKQ
FVAAEDPCKPLSDNQIADMLKEQGIECARRTVAKYREALRIAPTNLRKTL

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=342885 EUB48_RS01295 WP_142817193.1 263076..264668(+) (rpoN/rpoN1) [Rhodoferax sediminis strain CHu59-6-5]
ATGAAGCAGGGCCTGTCACTTCGCATTTCGCAGCATCTGGCGCTGACGCCGCAGCTGCAGCAGTCGATCCGGCTGCTGCA
GCTCTCGACGCTGGAGCTGAGCCAGGAAGTGGAGCAGATGCTCGATGACAACCCGTTCCTGGAGGTCGCCGAGCTGGAAG
CGCCGCGCGAGGAATTCGGCCTGGCGCAGTCCGACACGCGGGTGCGCGAAGACGACCGTGACACCGATTTTGCTACTAAT
TCGGTAGCTGGTAGCCAGGACGACATGAGGGCTACAGCTCAAAATGATGCTGAATTTCCGCTGTCGGGCCGCGACGAAGA
GCAAAGCTGGGACGGTGACGGCACCAGCGAGGTCCGGCCCGACGACAGCGAATGGGGCGGCGACGCGCCCGCGCGCAGCA
ACAACCTGGGCGACGCGGATGCAATGGATGCCACCGAGCTGGCGGGCAGTCAGGAATCGCTGCAGTCGCACCTGCACCGC
CAGGCGCTCTCACTGCGCCTGTCGCAGGAAGACCGCGCCGCGCTGCACTTCCTGATCGAATCGCTGAATGACGACGGCTA
CCTGGAAGACACGCTGCAGTCGCTGGCCGAAGGGCTGGCCGGCACCGACGAGGCGCAGGTGGAGGAACTGGTGCAGTGTT
TCACGGTGGCGTTGTCGCTCTTGCAGCACCTGGAGCCCACGGGCGTCGGCGCGCGGCATCTGGGCGAATGCCTGGCGCTG
CAGCTGCGCGCACTGCAGGACTTTGATCACGGCGACCCGGCGCGCCAGGAGGTCGTCGAGGTGGCGCTGCGCATGTGCGC
CCAGCCCATGGACCTGCTGGCGCGGCGCGACGTGCGGCGACTGGTGCAGCTGTGCGGCGCCACTGAAGCGCAGGTCAAGG
CCGCCATGGCGCTGATCGGCCGGCTCGAGCCCAAGCCGGGGCGGCGCTTCGTGCAGGTCGAGCGCAATATCGTGGTGCCC
GACGTGATCGTGACCAACGTCGGGCGCGGCGGCCAGCCCAAGTTTCGCGTGCAGCTCAATCCCGACGTGATGCCGCGCCT
GCGCGTGCACGACATCTATGCCAATGCACTCAAGCAACACAAGAGCGGCGGGCGCGATGCGTCGAACCACGCGGCGCTGC
AGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGTTTCGACACCATCCTGCGCGTGGCCAACGCC
ATCGTGGAGCGGCAAAAGAGCTTCTTTGTGCACGGCGAGCTGGCGATGCGCCCGCTGGTGCTGCGCGAGATTGCCGACGA
ACTCGGCCTGCACGAGTCCACCATCTCGCGCGTGACCACCGCCAAGTACATGGCCACGCCGTATGGCACCTTCGAGCTCA
AATACTTCTTTGGCTCGGGCCTGGGCACCGAAACCGGCGGCAATGCCTCGAGCACAGCAGTGCGCGCACTGATCAAGCAG
TTTGTGGCGGCTGAAGATCCCTGCAAGCCGCTCAGCGATAACCAGATTGCCGACATGCTGAAGGAACAGGGCATCGAGTG
CGCGCGCCGCACCGTGGCCAAATACCGCGAGGCGCTGCGGATCGCCCCCACCAACCTGAGAAAAACCCTGTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(146-353)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(372-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.316

100

0.515

Multiple sequence alignment