Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   F7V86_RS05055 Genome accession   NZ_CP044444
Coordinates   967793..967912 (+) Length   39 a.a.
NCBI ID   WP_021494790.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 962793..972912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS05035 narK 962952..964142 (-) 1191 WP_017418712.1 nitrate transporter NarK -
  F7V86_RS05040 argS 964277..965947 (-) 1671 WP_025649385.1 arginine--tRNA ligase -
  F7V86_RS05045 - 965944..966372 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  F7V86_RS05050 rapF 966664..967809 (+) 1146 WP_014419129.1 tetratricopeptide repeat protein Regulator
  F7V86_RS05055 phrF 967793..967912 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  F7V86_RS05060 - 968110..968313 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  F7V86_RS05065 - 968327..968530 (+) 204 WP_007407641.1 hypothetical protein -
  F7V86_RS05070 - 968565..968750 (+) 186 WP_014419130.1 DUF4177 domain-containing protein -
  F7V86_RS05075 - 968937..969218 (+) 282 WP_065180304.1 hypothetical protein -
  F7V86_RS05080 - 969262..969774 (+) 513 WP_014419132.1 stage II sporulation protein M -
  F7V86_RS05090 - 970365..970583 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  F7V86_RS05095 speB 970736..971608 (-) 873 WP_003151054.1 agmatinase -
  F7V86_RS05100 speE 971668..972498 (-) 831 WP_017418706.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=342628 F7V86_RS05055 WP_021494790.1 967793..967912(+) (phrF) [Bacillus amyloliquefaciens strain KC41]
MKLKYKLALTCLAIGTIFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=342628 F7V86_RS05055 WP_021494790.1 967793..967912(+) (phrF) [Bacillus amyloliquefaciens strain KC41]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTAGCGATAGGCACTATTTTTGTTTCAGCCGACATTGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487
  phrF Bacillus subtilis subsp. subtilis str. 168

66.667

69.231

0.462

Multiple sequence alignment