Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   BACIH_RS08395 Genome accession   NZ_CP044360
Coordinates   1643650..1645524 (+) Length   624 a.a.
NCBI ID   WP_012117587.1    Uniprot ID   A7Z4X6
Organism   Bacillus amyloliquefaciens strain V167     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1638650..1650524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS08380 (BACIH_1704) ymcA 1639702..1640133 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BACIH_RS08385 (BACIH_1705) cotE 1640386..1640931 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BACIH_RS08390 (BACIH_1706) hexA 1641050..1643629 (+) 2580 WP_150978908.1 DNA mismatch repair protein MutS Machinery gene
  BACIH_RS08395 (BACIH_1707) hexB 1643650..1645524 (+) 1875 WP_012117587.1 DNA mismatch repair endonuclease MutL Machinery gene
  BACIH_RS08400 - 1645918..1646127 (-) 210 WP_041482193.1 hypothetical protein -
  BACIH_RS08410 (BACIH_1709) - 1647092..1647769 (+) 678 WP_012117588.1 MBL fold metallo-hydrolase -
  BACIH_RS08415 (BACIH_1710) fabD 1648084..1648953 (+) 870 WP_012117589.1 ACP S-malonyltransferase -
  BACIH_RS08420 (BACIH_1711) - 1649090..1650064 (+) 975 WP_012117590.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70144.41 Da        Isoelectric Point: 6.0176

>NTDB_id=342270 BACIH_RS08395 WP_012117587.1 1643650..1645524(+) (hexB) [Bacillus amyloliquefaciens strain V167]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHISSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIIEEEILPNEADH
GVPPELGMPETAAPVSDTPEPEAVSEEIREERVPMMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVE
PEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKL
REEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=342270 BACIH_RS08395 WP_012117587.1 1643650..1645524(+) (hexB) [Bacillus amyloliquefaciens strain V167]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTCTCGAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAGC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCCATCCG
TCTCCGCCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATATCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCAGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TTGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACAGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CAATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGGTAATAATAGAAGAAGAGATCCTCCCGAATGAAGCGGATCAC
GGAGTGCCGCCGGAGCTCGGTATGCCCGAAACGGCAGCGCCTGTTTCCGATACTCCGGAACCGGAAGCTGTCTCTGAAGA
AATACGGGAAGAAAGAGTTCCGATGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCTCAAAACGAAAACG
GCTTGTATATCATTGACCAGCATGCGGCCCAAGAACGGATTAAATACGAATATTTCCGGGAGAAGGTCGGGCAGGTTGAG
CCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTATGCGGCAAATGAAGCGCTGATCATTGACCAGCATCAGCA
TGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTTCGCTGCCATCCGGCCTGGTTTC
CAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAGAAACTG
CGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGCGAAACGACGAAATCAAAGC
GCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGTACGT
ATGAGATGGAGAAAATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(439-580)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.357

100

0.479