Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   F5989_RS03865 Genome accession   NZ_CP044221
Coordinates   802014..802670 (+) Length   218 a.a.
NCBI ID   WP_002273621.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCH105     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 797014..807670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5989_RS03830 (F5989_03885) - 797249..797503 (-) 255 WP_002262064.1 DUF3165 family protein -
  F5989_RS03835 (F5989_03890) typA 797532..799376 (-) 1845 WP_002262063.1 translational GTPase TypA -
  F5989_RS03845 (F5989_03900) - 799610..799999 (-) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  F5989_RS03850 (F5989_03905) - 800009..800980 (-) 972 WP_002262061.1 ROK family glucokinase -
  F5989_RS03855 (F5989_03910) - 800973..801179 (-) 207 WP_002262060.1 YqgQ family protein -
  F5989_RS03860 (F5989_03915) dpr 801386..801913 (-) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  F5989_RS03865 (F5989_03920) cclA/cilC 802014..802670 (+) 657 WP_002273621.1 prepilin peptidase Machinery gene
  F5989_RS03870 (F5989_03925) trpA 802907..803689 (-) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  F5989_RS03875 (F5989_03930) trpB 803693..804904 (-) 1212 WP_002267347.1 tryptophan synthase subunit beta -
  F5989_RS03880 (F5989_03935) - 804901..805482 (-) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  F5989_RS03885 (F5989_03940) trpC 805469..806236 (-) 768 WP_002267346.1 indole-3-glycerol phosphate synthase TrpC -
  F5989_RS03890 (F5989_03945) trpD 806229..807236 (-) 1008 WP_002262053.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24911.12 Da        Isoelectric Point: 8.5763

>NTDB_id=341591 F5989_RS03865 WP_002273621.1 802014..802670(+) (cclA/cilC) [Streptococcus mutans strain NCH105]
MKLILFFMLGAAFGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFF
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKHKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=341591 F5989_RS03865 WP_002273621.1 802014..802670(+) (cclA/cilC) [Streptococcus mutans strain NCH105]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTGCTTTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTAATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCTTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGCACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

42.326

98.624

0.417
  cclA/cilC Streptococcus pneumoniae Rx1

41.784

97.706

0.408
  cclA/cilC Streptococcus pneumoniae D39

41.784

97.706

0.408
  cclA/cilC Streptococcus pneumoniae R6

41.784

97.706

0.408
  cclA/cilC Streptococcus mitis NCTC 12261

41.395

98.624

0.408
  cclA/cilC Streptococcus pneumoniae TIGR4

40.845

97.706

0.399