Detailed information NTG0034135

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SGPB_RS09865
• Genome accession: NC_015600
• Coordinates: 2009134..2010132 (-)
• Length: 332 a.a.
• NCBI ID: WP_013852324.1
• Uniprot ID: F5X3S6
• Organism: Streptococcus pasteurianus ATCC 43144
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2004134..2015132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGPB_RS09850 (SGPB_1936)	treP	2004663..2006636 (-)	1974	WP_013852322.1	PTS system trehalose-specific EIIBC component	-
SGPB_RS09855 (SGPB_1937)	treR	2006833..2007546 (+)	714	WP_013852323.1	trehalose operon repressor	Regulator
SGPB_RS09860 (SGPB_1938)	-	2007956..2008306 (-)	351	Protein_1951	isopeptide-forming domain-containing fimbrial protein	-
SGPB_RS09865 (SGPB_1939)	ruvB	2009134..2010132 (-)	999	WP_013852324.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SGPB_RS09870 (SGPB_1940)	nrdG	2010261..2010875 (-)	615	WP_003066866.1	anaerobic ribonucleoside-triphosphate reductase activating protein	-
SGPB_RS09875 (SGPB_1941)	-	2010917..2011423 (-)	507	WP_013852325.1	GNAT family N-acetyltransferase	-
SGPB_RS11085 (SGPB_1942)	-	2011435..2011596 (-)	162	WP_003066871.1	hypothetical protein	-
SGPB_RS09880 (SGPB_1943)	nrdD	2011821..2014037 (-)	2217	WP_003066874.1	anaerobic ribonucleoside-triphosphate reductase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37493.92 Da
• Isoelectric Point: 4.5455

>NTDB_id=34135 SGPB_RS09865 WP_013852324.1 2009134..2010132(-) (ruvB) [Streptococcus pasteurianus ATCC 43144]
MSRILDNDIMGDEEFAERTLRPQFLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYDVEDLTEIVERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIIT
KDITDKALTMLDVDHEGLDYIDQKILRTMIEIYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATEK
AYEHLGYPYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=34135 SGPB_RS09865 WP_013852324.1 2009134..2010132(-) (ruvB) [Streptococcus pasteurianus ATCC 43144]
ATGAGCAGAATTTTAGATAATGATATTATGGGTGATGAGGAATTTGCGGAGCGCACGCTTCGTCCTCAGTTTTTAAAAGA
ATATATCGGACAAGATAAGGTTAAAAATCAGCTAAAAATCTTTATTGAGGCAGCAAAATTACGTGACGAGTCTTTGGACC
ATGTGCTATTGTTTGGACCTCCTGGTCTTGGTAAAACGACAATGGCATTTGTGATTGCTAATGAATTAGGGGTGAATTTA
AAACAGACATCTGGACCTGCTATCGAAAAAGCTGGTGATTTGGTTGCTATCTTGAATGATTTGGAACCTGGTGATGTGCT
TTTTATTGACGAAATTCATCGTATGCCAATGGCTGTGGAAGAAGTACTTTATAGCGCCATGGAAGATTTTTATATTGACA
TCATGATTGGCAATGGCGAGACTAGTCGTAGTGTTCACTTGGATTTACCACCGTTTACCCTGATTGGTGCGACAACACGT
GCTGGTATGCTTTCTAATCCTTTACGTGCTCGTTTTGGCATTACTGGGCATATGGAATACTATGACGTTGAAGATTTGAC
AGAAATTGTTGAACGCACGGCAGATATTTTTGAAATGGAAATTGTCCATGAAGCTGCCCAAGAATTGGCACGACGTAGTC
GTGGAACACCTCGTATTGCTAATCGTCTCTTAAAACGTGTACGTGATTACGCCCAAATTATGGGAGATGGTATTATCACA
AAAGATATTACCGATAAAGCATTGACGATGTTAGATGTTGACCATGAGGGGCTTGATTACATTGACCAGAAAATTTTGCG
TACCATGATTGAGATTTATAACGGTGGTCCTGTCGGTTTAGGAACGCTATCCGTTAATATCGCTGAAGAGCGTGATACTG
TTGAGGATATGTATGAGCCGTATTTGATTCAAAAAGGCTTTATTATGCGCACTCGTACTGGTCGTGTGGCAACTGAAAAA
GCTTATGAACATTTGGGCTATCCTTATTCGGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

3D structure

• AlphaFold DB: F5X3S6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.458	100	0.895
ruvB	Streptococcus pneumoniae R6	89.458	100	0.895
ruvB	Streptococcus pneumoniae D39	89.458	100	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.92	97.289	0.602
ruvB	Helicobacter pylori 26695	50	98.193	0.491
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47