Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SGPB_RS02610 Genome accession   NC_015600
Coordinates   485094..485744 (-) Length   216 a.a.
NCBI ID   WP_013851566.1    Uniprot ID   F5X588
Organism   Streptococcus pasteurianus ATCC 43144     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 480094..490744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS02575 - 480656..480943 (+) 288 Protein_459 chorismate mutase -
  SGPB_RS02580 (SGPB_0459) - 480957..481463 (+) 507 Protein_460 anthranilate synthase component I -
  SGPB_RS02585 - 481563..481754 (-) 192 WP_043910115.1 PspC domain-containing protein -
  SGPB_RS02590 (SGPB_0460) - 481747..482496 (-) 750 WP_013851565.1 ABC transporter permease -
  SGPB_RS11620 (SGPB_0461) - 482688..482801 (-) 114 WP_416316120.1 helix-turn-helix transcriptional regulator -
  SGPB_RS02600 (SGPB_0462) - 482889..483266 (-) 378 Protein_464 conjugal transfer protein -
  SGPB_RS11270 - 483269..483538 (+) 270 Protein_465 sodium transporter -
  SGPB_RS02605 (SGPB_0463) - 483671..485011 (-) 1341 WP_003063674.1 Nramp family divalent metal transporter -
  SGPB_RS02610 (SGPB_0464) cclA/cilC 485094..485744 (-) 651 WP_013851566.1 prepilin peptidase Machinery gene
  SGPB_RS02615 (SGPB_0465) - 485874..486404 (+) 531 WP_013851567.1 Dps family protein -
  SGPB_RS02620 (SGPB_0466) - 486575..486784 (+) 210 WP_012961615.1 YqgQ family protein -
  SGPB_RS02625 (SGPB_0467) - 486777..487745 (+) 969 WP_013851568.1 ROK family glucokinase -
  SGPB_RS02630 (SGPB_0468) - 487756..488136 (+) 381 WP_003063685.1 rhodanese-like domain-containing protein -
  SGPB_RS02635 (SGPB_0469) - 488151..489197 (+) 1047 WP_013851569.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24815.77 Da        Isoelectric Point: 5.5386

>NTDB_id=34077 SGPB_RS02610 WP_013851566.1 485094..485744(-) (cclA/cilC) [Streptococcus pasteurianus ATCC 43144]
MDILLFFFLGASIASFLSLIVDRFPEKSIIFPASHCDSCGKQLAIRDLIPIFSQLINHSRCRFCHTKIPFWYGLLELYFG
VIVVLYYCALLSLDQVFILFFSTTLSLYDLKCQEFPLLVWLLPSIFLLFVTPINALAIILLAFGIMAELIDLKIGSGDFF
YLASLSLLLDVQTILWIIELGSLSGIIYYFFQTNKRIPFVPFLFLGYLILFIFNHD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=34077 SGPB_RS02610 WP_013851566.1 485094..485744(-) (cclA/cilC) [Streptococcus pasteurianus ATCC 43144]
ATGGACATTTTATTATTCTTTTTTCTAGGGGCTTCTATTGCTTCTTTTCTCAGTTTAATCGTTGATCGATTTCCTGAAAA
ATCAATCATTTTTCCTGCCAGTCACTGTGATTCTTGTGGAAAACAACTTGCCATTCGTGATTTGATTCCTATTTTTTCTC
AACTGATAAATCATTCACGTTGTCGTTTTTGCCACACCAAAATTCCTTTCTGGTATGGACTATTAGAACTTTATTTTGGG
GTCATTGTCGTACTTTACTATTGCGCACTTCTCTCACTCGACCAAGTTTTTATCTTGTTTTTTAGCACAACGCTTAGTCT
TTATGACTTGAAATGTCAAGAGTTTCCATTGTTGGTTTGGCTCCTTCCAAGTATTTTTTTGCTTTTTGTCACGCCGATTA
ATGCGCTAGCTATTATTCTTTTGGCTTTTGGGATAATGGCAGAGCTGATTGATTTGAAAATCGGTAGCGGTGATTTTTTC
TACCTTGCCAGTTTGAGTCTGCTTCTTGACGTTCAAACCATTTTATGGATTATCGAACTTGGCTCTCTTTCAGGTATTAT
TTACTACTTTTTCCAGACAAATAAACGAATTCCCTTTGTGCCATTTTTGTTTTTAGGATATCTGATTTTATTCATTTTTA
ACCATGATTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5X588

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

46.117

95.37

0.44
  cclA/cilC Streptococcus pneumoniae Rx1

46.04

93.519

0.431
  cclA/cilC Streptococcus pneumoniae D39

46.04

93.519

0.431
  cclA/cilC Streptococcus pneumoniae R6

46.04

93.519

0.431
  cclA/cilC Streptococcus pneumoniae TIGR4

46.04

93.519

0.431
  cclA/cilC Streptococcus mitis NCTC 12261

45.05

93.519

0.421

Multiple sequence alignment