Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   F5K02_RS05500 Genome accession   NZ_CP044132
Coordinates   1082367..1085249 (+) Length   960 a.a.
NCBI ID   WP_241458106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1077367..1090249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS05475 (F5K02_05510) - 1077805..1078572 (+) 768 WP_007409232.1 enoyl-CoA hydratase -
  F5K02_RS05480 (F5K02_05515) - 1078597..1078782 (-) 186 WP_015239502.1 YhzD family protein -
  F5K02_RS05485 (F5K02_05520) - 1078888..1079784 (+) 897 WP_094032912.1 ABC transporter ATP-binding protein -
  F5K02_RS05490 (F5K02_05525) - 1079777..1081036 (+) 1260 WP_014304724.1 ABC transporter permease -
  F5K02_RS05495 (F5K02_05530) - 1081147..1082370 (+) 1224 WP_094032913.1 DNA repair exonuclease -
  F5K02_RS05500 (F5K02_05535) sbcE 1082367..1085249 (+) 2883 WP_241458106.1 AAA family ATPase Machinery gene
  F5K02_RS05505 (F5K02_05540) yhaM 1085323..1086267 (+) 945 WP_003155251.1 3'-5' exoribonuclease YhaM -
  F5K02_RS05510 (F5K02_05545) - 1086382..1086609 (+) 228 WP_015417149.1 sporulation YhaL family protein -
  F5K02_RS05515 (F5K02_05550) - 1086648..1087505 (-) 858 WP_094032916.1 peptidylprolyl isomerase -
  F5K02_RS05520 (F5K02_05555) yhzE1 1087664..1087750 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  F5K02_RS05525 (F5K02_05560) yhzE2 1087875..1087961 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  F5K02_RS05530 (F5K02_05565) - 1088018..1088236 (-) 219 WP_003155245.1 hypothetical protein -
  F5K02_RS05535 (F5K02_05570) - 1088297..1088827 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -
  F5K02_RS05540 (F5K02_05580) - 1089038..1089379 (+) 342 WP_003155243.1 YhaI family protein -
  F5K02_RS05545 (F5K02_05585) - 1089376..1089987 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109685.73 Da        Isoelectric Point: 7.8037

>NTDB_id=340759 F5K02_RS05500 WP_241458106.1 1082367..1085249(+) (sbcE) [Bacillus amyloliquefaciens strain ZKY01]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTNRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPEALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQADLLAPNEDLLQKERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVLSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHALTAENILDPAVRKEKEAGFQSYKQTADTEGNEWQAHVQQLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGMQKPLPSERGGPGHKKKKPAISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMKELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VRERLHVLLAQAERAREEAKRKQALETDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLNESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREQTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYHKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRQRLQRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=340759 F5K02_RS05500 WP_241458106.1 1082367..1085249(+) (sbcE) [Bacillus amyloliquefaciens strain ZKY01]
ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCAGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGGTTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCGTACTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGGCGATCACGGCGCTGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTTTCCGATACAAATCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAGG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGGCTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGAAGCATTGAAGCAATTCCCGAAGGA
TGGAATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGTCTTGAGGGGCTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGATCTGCTCGCTCCAAATGAGGACTTGCTGCAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTATGAATCGCGCGGCGAACAGCTTGCAGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTTGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAAGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCTTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGGTTTTCAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTTCAGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCGATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGTGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAACCGCTGCCGTCAGAAAGAGGAGG
GCCCGGACACAAGAAAAAGAAGCCGGCGATCTCTAAAGAAGCGGCTGATCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCGGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAAGGAACTGGGGTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTAATGAAAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAG
CGGGCCGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAGAGAAAGACTGCACGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAC
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAACCGCGAACACTTTTGTGAACTCGCCAGGCTGAATGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTGGAGCCGTACATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCCCAGCTCCGTGAGCAAACCG
CTTTATTAACGGTGAAGCAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATTATCAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGACCGCTTACGGACGGACGCTATCACAAAT
TGTATTTTTCCGAGGCTGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCTGCAGGCGAACTCTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATTCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTGCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGGCAGCGGCTGCAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTTACCTGTCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

56.95

100

0.572

Multiple sequence alignment