Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   F3K20_RS13725 Genome accession   NZ_CP043956
Coordinates   3197701..3199434 (+) Length   577 a.a.
NCBI ID   WP_013003830.1    Uniprot ID   C9ZAX1
Organism   Streptomyces sp. LBUM 1482     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3192701..3204434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K20_RS13690 (F3K20_13825) - 3192703..3193518 (-) 816 WP_037726469.1 oxidoreductase -
  F3K20_RS13695 (F3K20_13830) - 3193733..3194356 (+) 624 WP_013003841.1 TetR/AcrR family transcriptional regulator -
  F3K20_RS13715 (F3K20_13850) - 3195665..3195970 (+) 306 WP_037726468.1 hypothetical protein -
  F3K20_RS13720 (F3K20_13855) - 3196040..3197494 (+) 1455 WP_013003831.1 FGGY family carbohydrate kinase -
  F3K20_RS13725 (F3K20_13860) rcrP 3197701..3199434 (+) 1734 WP_013003830.1 ABC transporter ATP-binding protein Regulator
  F3K20_RS13730 (F3K20_13865) rcrQ 3199434..3201368 (+) 1935 WP_013003829.1 ABC transporter ATP-binding protein Regulator
  F3K20_RS13735 (F3K20_13870) - 3201468..3202793 (-) 1326 WP_060904682.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 63008.19 Da        Isoelectric Point: 5.7639

>NTDB_id=339790 F3K20_RS13725 WP_013003830.1 3197701..3199434(+) (rcrP) [Streptomyces sp. LBUM 1482]
MLIRLLRSHLRPYRTPITLLVLLQFVQTCATLYLPTLNADIIDKGVVEGDTGYILSFGALMVGISLVQVVCNIGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLVVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRAMQERLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRKANAELTEVSLGTGRMLAL
MFPIVMTVINLSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMAVMMATFMFMMMPRAEVCAERIQEVLDTDTSVVP
PVAPVRELRRHGFLEVRGAGFRYPGAEEPVLRSIEVVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGVDVR
TLDPQLLARTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAREFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETADATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=339790 F3K20_RS13725 WP_013003830.1 3197701..3199434(+) (rcrP) [Streptomyces sp. LBUM 1482]
GTGCTCATACGATTGCTGAGAAGTCATCTCCGTCCTTACCGGACACCGATCACCCTGCTGGTGCTGCTGCAGTTCGTGCA
GACGTGCGCCACGCTCTACCTGCCCACACTGAACGCGGACATCATCGACAAGGGCGTGGTGGAGGGGGACACGGGCTACA
TCCTGTCCTTCGGCGCGCTGATGGTCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGGGCCGTGTACTACGGCGCC
CGCACCGCCTCGGCGGTCGGCCGGGACATCCGGGCGGCCGTGTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAAGTCGG
TCACTTCGGGGCCCCGTCGCTGATCACGCGGACGACGAACGACGTCCAGCAGGTGCAGATGCTGGTGCTCATGACGTTCA
CGCTGGTGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCGCTCGGGCTGGACGTGCCGCTGTCGGGGGTA
CTGCTCGCCGTCGTACCGGTGCTCGGCATCTCGGTCAGCCTGATCGTGCGGCGGCTGCGCCCCCTGTTCCGTGCCATGCA
GGAGCGGCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGGGACG
ACTACGAGAAGGACCGGTTCCGGAAGGCGAACGCCGAGCTGACGGAGGTGTCCCTCGGTACCGGGCGGATGCTCGCGCTG
ATGTTCCCGATCGTGATGACCGTCATCAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGTGCCCATCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGATGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTCGACACCGACACCAGTGTGGTGCCG
CCGGTCGCGCCCGTCCGGGAGCTGCGCAGGCACGGGTTCCTTGAGGTGCGGGGCGCGGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTCCGGTCGATCGAGGTCGTCGCCCGGCCCGGTGAGACGACCGCCGTCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTGGTGCCCCGGCTGTTCGACGTCACCGAGGGCGAGGTGCTGGTGGACGGCGTCGACGTACGG
ACGCTCGATCCGCAGCTGCTGGCCAGGACCGTGGGGCTGGTGCCGCAGAAGCCGTACCTGTTCTCGGGGACCGTGGCGAC
GAACCTGCGGTACGGCAATCCCGACGCCACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAGGGAGTTCG
TGGAGCGGCTGGAGAACGGGCTGGACTCCCCCATCGCACAGGGCGGGACGAACGTGTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTATCTGTTCGACGACTCCTTCTCCGCGCTGGACTACGCGACCGA
CGCCGCCCTGCGCGCGGCGCTGGGGCGGGAGACCGCCGACGCGACCGTGGTGATCGTGGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCACCACGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTCCTCTCCCAGCTCACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9ZAX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.254

97.574

0.383

Multiple sequence alignment