Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VC395_RS18080 Genome accession   NC_012583
Coordinates   753195..754364 (+) Length   389 a.a.
NCBI ID   WP_001039913.1    Uniprot ID   -
Organism   Vibrio cholerae O395     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 748195..759364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC395_RS18065 (VC395_A0797) - 749028..750017 (-) 990 WP_000610707.1 GTP-binding protein -
  VC395_RS18070 (VC395_A0798) clcA 750484..751890 (+) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -
  VC395_RS18075 (VC395_A0800) - 752037..752998 (+) 962 Protein_745 TDT family transporter -
  VC395_RS18080 (VC395_A0801) cqsA 753195..754364 (+) 1170 WP_001039913.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VC395_RS18085 (VC395_A0802) cqsS 754467..756527 (-) 2061 WP_011929317.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43520.58 Da        Isoelectric Point: 6.2265

>NTDB_id=33948 VC395_RS18080 WP_001039913.1 753195..754364(+) (cqsA) [Vibrio cholerae O395]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVTDEQIAKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=33948 VC395_RS18080 WP_001039913.1 753195..754364(+) (cqsA) [Vibrio cholerae O395]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTCTGGCTAAGTTCACAGGCTTTGATGAATGTCTATTATCTCAATC
TGGTTGGAATGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCGCGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGTCCTGGGATCATTGTCGTAGACTCGATTTACAGCACTTTAGGTACGATTGCACCGCTAGCGGA
ACTGGTCAATATCAGCAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGCACACATGGCCCTAATG
GTGCAGGTTTATTGGCAGAATTAGGCCTCACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCAGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACGACTTTAGAGATTATTGAATCTGCGGATAATCGTCGTCAGCATTTAG
ATCGTATGGCAAGAAAATTACGCATAGGATTATCCCAGCTGGGATTAACCATTCGCAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTATTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCAAAGAATAAAAACATTATTCGCTTATCACTCAATAGTGATGTGACCGATGAGCAAATCGCCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGCGGTGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

99.486

100

0.995

Multiple sequence alignment