Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Chls_RS03000 Genome accession   NZ_CP035278
Coordinates   703667..705028 (+) Length   453 a.a.
NCBI ID   WP_080122191.1    Uniprot ID   -
Organism   Chlamydia suis strain R19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 698667..710028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Chls_RS02975 (Chls_610) accD 698734..699661 (-) 928 Protein_563 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  Chls_RS02980 (Chls_611) - 699732..700352 (-) 621 WP_080122328.1 superoxide dismutase -
  Chls_RS02985 (Chls_612) - 700485..702266 (-) 1782 WP_181389125.1 phospho-sugar mutase -
  Chls_RS02990 (Chls_613) - 702413..702880 (-) 468 WP_080122189.1 DUF5070 domain-containing protein -
  Chls_RS02995 (Chls_614) rnc 702988..703683 (+) 696 WP_080122190.1 ribonuclease III -
  Chls_RS03000 (Chls_615) radA 703667..705028 (+) 1362 WP_080122191.1 DNA repair protein RadA Machinery gene
  Chls_RS03005 (Chls_616) - 705006..705761 (+) 756 WP_080122192.1 hydroxymethylbilane synthase -
  Chls_RS03010 (Chls_617) - 705835..706389 (+) 555 WP_181389126.1 hypothetical protein -
  Chls_RS03015 (Chls_618) - 706449..706793 (+) 345 WP_162533472.1 hypothetical protein -
  Chls_RS03020 (Chls_619) pknD 706880..709672 (-) 2793 WP_181389127.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49657.30 Da        Isoelectric Point: 8.3179

>NTDB_id=338841 Chls_RS03000 WP_080122191.1 703667..705028(+) (radA) [Chlamydia suis strain R19]
MTTKTKTLWGCTTCGSYSPKWLGQCPGCLHWNTLVEEKLPYKPNTTSLPSSTAPIPLNTVEFQEEIRLYTRAPGWNRLLG
GGTVRGSLTLLGGEPGIGKSTLLLQISSQFAKQGYSVLYVCGEESVSQTSLRAQRLNISSSNIFLFPETNLDDIKRQITN
LTPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHLAKQKQITTFIIGHVTKSGDIAGPRILEHLVDTVLYFEGNAH
ANYRMIRSVKNRFGPTNELLILAMQTNGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEMQALVSSSPFSNPVR
KTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKISQPSADLGAVLSVVSSLYNRFLPKNYTYTGEIGLGGEIRH
VTHIESRIKESILMGFKGIVLPFGQMKGLPEEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=338841 Chls_RS03000 WP_080122191.1 703667..705028(+) (radA) [Chlamydia suis strain R19]
ATGACAACAAAAACTAAAACACTATGGGGTTGTACGACATGCGGCTCTTATTCTCCAAAATGGCTAGGACAATGTCCTGG
GTGTCTTCACTGGAATACTTTGGTCGAAGAAAAACTTCCTTATAAACCAAACACCACGTCCCTACCCAGCTCCACAGCCC
CAATACCTCTAAACACTGTAGAATTTCAGGAAGAGATCCGACTGTATACTCGTGCTCCAGGATGGAATCGCCTTCTTGGA
GGAGGGACTGTTCGCGGTAGTTTAACCCTGCTAGGAGGAGAGCCCGGTATTGGAAAATCCACCCTATTGCTTCAAATTTC
TTCTCAATTTGCCAAACAAGGCTATTCAGTATTGTATGTTTGTGGGGAAGAATCCGTGTCCCAAACTTCATTACGCGCAC
AACGACTAAACATCTCTAGCAGCAATATTTTTCTATTCCCAGAAACAAACTTAGACGATATCAAACGACAGATCACGAAT
CTTACTCCAGATATCTTAGTCATAGATTCTATTCAGATCATTTTTTCTCCATCGCTAAGCTCTGCTCCAGGATCTGTTGC
CCAAGTCAGGGAGACCACAGCAGAACTTATGCATCTCGCGAAACAAAAACAGATAACGACCTTTATTATTGGGCACGTTA
CCAAATCAGGAGACATCGCAGGACCTCGTATTCTTGAACATTTAGTAGATACAGTCCTTTATTTCGAAGGCAATGCACAT
GCCAATTATCGCATGATCCGCTCCGTAAAAAACCGCTTCGGCCCAACTAACGAGTTACTGATTCTTGCCATGCAGACAAA
TGGATTACGTGAAGTAGAAAATCCTTCGGGACTTTTTTTACAAGAAAAAATTGTAGAAACAACCGGCTCTACCATTATTC
CTATTGTAGAGGGATCAGAAACGCTTCTTGTCGAAATGCAAGCGCTTGTTTCCTCATCTCCATTCTCAAACCCCGTACGA
AAAACTTCTGGATTTGACCCCAACCGATTCTCTTTGCTCTTAGCGGTTTTAGAAAAAAGAGCAAATGTTAAATTATACAC
TTCCGATGTCTTTCTCTCTATAGCAGGAGGTTTAAAAATCTCACAACCTTCAGCAGATTTGGGAGCGGTGCTATCGGTCG
TTTCTTCCCTATATAATCGCTTTTTACCTAAAAACTATACCTATACTGGGGAAATTGGACTGGGAGGGGAGATTCGGCAC
GTTACACACATAGAATCCCGCATAAAAGAGAGTATTCTTATGGGATTTAAAGGCATTGTTCTGCCTTTCGGGCAAATGAA
AGGTTTACCTGAAGAATTTTTGGATCAAATTGACATTATTGGAGTAAAAACAATCAAAGATGCTGTCCGCTTATTACAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(69-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.488
  radA Streptococcus pneumoniae Rx1

47.566

99.779

0.475
  radA Streptococcus pneumoniae D39

47.566

99.779

0.475
  radA Streptococcus pneumoniae R6

47.566

99.779

0.475
  radA Streptococcus pneumoniae TIGR4

47.566

99.779

0.475
  radA Streptococcus mitis NCTC 12261

47.345

99.779

0.472
  radA Streptococcus mitis SK321

47.111

99.338

0.468

Multiple sequence alignment