Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FY406_RS05705 Genome accession   NZ_CP043405
Coordinates   1151003..1151665 (+) Length   220 a.a.
NCBI ID   WP_003086455.1    Uniprot ID   A0ABN0GX84
Organism   Streptococcus ratti strain ATCC 31377     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1146003..1156665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS05680 (FY406_05680) - 1146017..1147429 (+) 1413 WP_003086446.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FY406_RS05685 (FY406_05685) - 1147416..1147793 (+) 378 WP_003086447.1 S1 RNA-binding domain-containing protein -
  FY406_RS05690 (FY406_05690) cysK 1147983..1148909 (-) 927 WP_003086449.1 cysteine synthase A -
  FY406_RS05695 (FY406_05695) - 1149004..1149633 (-) 630 WP_003086451.1 YigZ family protein -
  FY406_RS05700 (FY406_05700) comFA/cflA 1149705..1151006 (+) 1302 WP_003086453.1 DEAD/DEAH box helicase Machinery gene
  FY406_RS05705 (FY406_05705) comFC/cflB 1151003..1151665 (+) 663 WP_003086455.1 ComF family protein Machinery gene
  FY406_RS05710 (FY406_05710) hpf 1151750..1152298 (+) 549 WP_003086457.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FY406_RS05715 (FY406_05715) - 1152582..1153676 (+) 1095 WP_003086460.1 hypothetical protein -
  FY406_RS05720 (FY406_05720) - 1153692..1155389 (+) 1698 WP_003086462.1 zinc ribbon domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25075.03 Da        Isoelectric Point: 9.8249

>NTDB_id=336863 FY406_RS05705 WP_003086455.1 1151003..1151665(+) (comFC/cflB) [Streptococcus ratti strain ATCC 31377]
MNCLLCQSPFERSLSFSSVFFLSAAQEAVCPSCFSKFQRISDSHCPACCKNGINTYCQDCLYWQSKGQKVNHRALFCYNQ
AMKDYFSTYKFQGDYLLRKVFAKTVKKALKNRNGYTLVPIPISRSSLSSRGFNQVEAFLDEAKLPYSQLLGKKDSMKQSS
KKRQERLSSQQFFYLRKVKALPDKVILVDDIYTTGTTIQLASQLLCENGVKTVISFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=336863 FY406_RS05705 WP_003086455.1 1151003..1151665(+) (comFC/cflB) [Streptococcus ratti strain ATCC 31377]
ATGAATTGTCTGCTATGTCAGTCACCTTTTGAAAGGAGCCTAAGTTTTTCTTCTGTCTTTTTCCTGAGTGCTGCGCAGGA
AGCGGTTTGTCCCAGCTGTTTTTCTAAATTTCAGCGTATTTCAGACAGTCATTGTCCTGCTTGCTGTAAAAATGGTATTA
ATACTTATTGTCAGGACTGTCTTTACTGGCAAAGCAAGGGACAAAAGGTCAATCACAGAGCTCTCTTTTGTTATAATCAA
GCAATGAAAGATTATTTTAGTACTTACAAATTCCAAGGAGATTATCTCTTAAGAAAGGTTTTTGCAAAAACTGTCAAGAA
AGCTTTAAAAAACAGAAACGGCTATACTTTGGTTCCTATTCCAATCAGCCGCTCTAGCTTAAGCAGCCGCGGATTTAATC
AGGTAGAGGCTTTTTTAGATGAGGCAAAACTACCCTACAGCCAATTATTAGGAAAAAAGGACAGCATGAAGCAATCGAGC
AAAAAACGGCAGGAGAGACTGTCCAGTCAGCAATTTTTTTATTTAAGAAAGGTTAAAGCATTACCTGATAAGGTTATATT
AGTGGACGATATCTACACTACAGGTACCACTATTCAGCTAGCCAGTCAGCTATTGTGTGAAAACGGTGTGAAAACAGTGA
TATCTTTTTCTTTAGCAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

46.364

100

0.464
  comFC/cflB Streptococcus mitis NCTC 12261

46.364

100

0.464
  comFC/cflB Streptococcus pneumoniae Rx1

46.364

100

0.464
  comFC/cflB Streptococcus pneumoniae D39

46.364

100

0.464
  comFC/cflB Streptococcus pneumoniae R6

46.364

100

0.464
  comFC/cflB Streptococcus mitis SK321

45.909

100

0.459

Multiple sequence alignment