Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EQZ01_RS16470 Genome accession   NZ_CP035231
Coordinates   3135297..3135941 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130297..3140941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS16435 (EQZ01_16435) mrpB 3131489..3131920 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  EQZ01_RS16440 (EQZ01_16440) mrpC 3131920..3132261 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  EQZ01_RS16445 (EQZ01_16445) mrpD 3132254..3133735 (+) 1482 WP_128738179.1 Na+/H+ antiporter subunit D -
  EQZ01_RS16450 (EQZ01_16450) mrpE 3133741..3134217 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  EQZ01_RS16455 (EQZ01_16455) mrpF 3134217..3134501 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  EQZ01_RS16460 (EQZ01_16460) mnhG 3134485..3134859 (+) 375 WP_128738180.1 monovalent cation/H(+) antiporter subunit G -
  EQZ01_RS16465 (EQZ01_16465) yuxO 3134898..3135278 (-) 381 WP_071579112.1 hotdog fold thioesterase -
  EQZ01_RS16470 (EQZ01_16470) comA 3135297..3135941 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  EQZ01_RS16475 (EQZ01_16475) comP 3136022..3138331 (-) 2310 WP_128738181.1 two-component system sensor histidine kinase ComP Regulator
  EQZ01_RS16480 (EQZ01_16480) comX 3138346..3138513 (-) 168 WP_100505762.1 competence pheromone ComX Regulator
  EQZ01_RS16485 (EQZ01_16485) comQ 3138497..3139399 (-) 903 WP_128738182.1 polyprenyl synthetase family protein Regulator
  EQZ01_RS16490 (EQZ01_16490) degQ 3139584..3139724 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  EQZ01_RS16495 (EQZ01_16495) - 3139946..3140071 (+) 126 WP_003228793.1 hypothetical protein -
  EQZ01_RS16500 (EQZ01_16500) - 3140185..3140553 (+) 369 WP_116315920.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=336479 EQZ01_RS16470 WP_003220716.1 3135297..3135941(-) (comA) [Bacillus subtilis strain SRCM103571]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=336479 EQZ01_RS16470 WP_003220716.1 3135297..3135941(-) (comA) [Bacillus subtilis strain SRCM103571]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment