Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SGGBAA2069_RS06675 Genome accession   NC_015215
Coordinates   1332264..1334036 (-) Length   590 a.a.
NCBI ID   WP_013643184.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1327264..1339036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS06645 (SGGBAA2069_c12720) - 1327638..1328264 (-) 627 WP_013643181.1 ABC transporter permease -
  SGGBAA2069_RS06650 (SGGBAA2069_c12730) - 1328257..1329030 (-) 774 WP_009854387.1 ABC transporter ATP-binding protein -
  SGGBAA2069_RS06655 (SGGBAA2069_c12740) - 1329043..1329963 (-) 921 WP_013643182.1 glycine betaine ABC transporter substrate-binding protein -
  SGGBAA2069_RS06660 (SGGBAA2069_c12750) - 1329953..1330588 (-) 636 WP_009854389.1 ABC transporter permease -
  SGGBAA2069_RS06665 (SGGBAA2069_c12760) - 1330578..1331030 (-) 453 WP_009854390.1 MarR family winged helix-turn-helix transcriptional regulator -
  SGGBAA2069_RS06670 (SGGBAA2069_c12770) - 1331020..1331997 (-) 978 WP_013643183.1 zinc-binding dehydrogenase -
  SGGBAA2069_RS06675 (SGGBAA2069_c12780) rcrQ 1332264..1334036 (-) 1773 WP_013643184.1 ABC transporter ATP-binding protein Regulator
  SGGBAA2069_RS06680 (SGGBAA2069_c12790) rcrP 1334026..1335840 (-) 1815 WP_009854393.1 ABC transporter ATP-binding protein Regulator
  SGGBAA2069_RS06685 (SGGBAA2069_c12800) rcrR 1335844..1336284 (-) 441 WP_012962070.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SGGBAA2069_RS06690 (SGGBAA2069_c12820) - 1336459..1336869 (-) 411 WP_013643186.1 peptide deformylase -
  SGGBAA2069_RS06695 (SGGBAA2069_c12830) - 1336866..1337375 (-) 510 WP_013643187.1 GNAT family N-acetyltransferase -
  SGGBAA2069_RS06700 (SGGBAA2069_c12840) gdhA 1337652..1339001 (-) 1350 WP_012962073.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65223.29 Da        Isoelectric Point: 5.0380

>NTDB_id=33627 SGGBAA2069_RS06675 WP_013643184.1 1332264..1334036(-) (rcrQ) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MENKKKTSFYGRMKPYIKGFQLPFLLAVIGAIVSATVTVIGPDKLKEITNTITKGLTPTATGMIPGIDLDKVGEIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKIDKVPLNYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAAGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAVKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVAFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGQITIDGVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=33627 SGGBAA2069_RS06675 WP_013643184.1 1332264..1334036(-) (rcrQ) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGGAAAATAAGAAAAAAACATCTTTCTATGGCAGAATGAAGCCCTACATTAAAGGTTTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGGTTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATACAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTGAAATTGCATTAACTTTAGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACCGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTGACAAGGTTCCATTGAATTACTTTGATAGTCATTCGCAAGGGGACACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTGGTGACATCAACCATGTTA
TTGATTGGTTCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTTTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGCCAACAAAATAACTTGGCTGCGATTAACGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGCTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGGTATGTTATGGTCTGTGTGGTTGGTGCCGTTAAAGTTATCAATGGTGATATTACCATGGGTGACGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCTGCCATGAGTCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGACGAGTCTGACAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTGCCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCCGCTG
TGGCGAAACCTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGCGCTGGTAAAACAACCATTGTTAACCTGCTCATGAAA
TTTTATGAAATCGATAAAGGTCAAATCACTATTGATGGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGATGAACAAGTTATTGCAGCAGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAAGGTTATGACACT
TATCTTGATGATTCTGTAACACTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTCTGAAAGATTCACC
GCTCCTTATTTTGGACGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATTGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAC
GGTAACATCATCGAACAAGGTAATCACGATGATTTGATGCAACAAGGTGGCTTCTATGCAGACCTTTACAACTCACAATT
TGAAGTAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.649

100

0.739