Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   FRD49_RS03360 Genome accession   NZ_CP042994
Coordinates   693116..693631 (-) Length   171 a.a.
NCBI ID   WP_032010054.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 688116..698631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS03335 (FRD49_03335) - 688657..690300 (+) 1644 WP_004712033.1 nitrite/sulfite reductase -
  FRD49_RS03340 (FRD49_03340) - 690293..690778 (+) 486 WP_032010052.1 DUF934 domain-containing protein -
  FRD49_RS03345 (FRD49_03345) - 690857..691210 (+) 354 WP_002051463.1 DMT family transporter -
  FRD49_RS03350 (FRD49_03350) - 691263..691706 (-) 444 WP_002051396.1 VOC family protein -
  FRD49_RS03355 (FRD49_03355) - 691832..693007 (-) 1176 WP_004712038.1 thiolase family protein -
  FRD49_RS03360 (FRD49_03360) fimT 693116..693631 (-) 516 WP_032010054.1 GspH/FimT family pseudopilin Machinery gene
  FRD49_RS03365 (FRD49_03365) omp38 694011..695060 (+) 1050 WP_032010056.1 outer membrane protein Omp38 -
  FRD49_RS19030 - 695185..695343 (-) 159 WP_004712046.1 hypothetical protein -
  FRD49_RS03370 (FRD49_03370) - 695347..696552 (-) 1206 WP_032010059.1 RtcB family protein -
  FRD49_RS03375 (FRD49_03375) - 696830..698290 (-) 1461 WP_148356646.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19422.59 Da        Isoelectric Point: 8.1691

>NTDB_id=333963 FRD49_RS03360 WP_032010054.1 693116..693631(-) (fimT) [Acinetobacter nosocomialis strain J1A]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIHHKNIVLCPSSDQVICNIDWN
KHLISFVDSNRNLQHDLNEELLTSIDLNHTYGSMTLQRFGKKQNSIVFQGSSGLPIESNGSFMYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=333963 FRD49_RS03360 WP_032010054.1 693116..693631(-) (fimT) [Acinetobacter nosocomialis strain J1A]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACCTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTCATCATAAGAACATTGTTCTGTGTCCGAGTTCAGATCAGGTAATCTGTAATATAGATTGGAAT
AAACACTTAATCAGCTTCGTAGATAGTAACCGCAATCTACAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGACATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTATTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATGTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427