Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FWK44_RS08105 | Genome accession | NZ_CP042984 |
| Coordinates | 1724584..1725927 (-) | Length | 447 a.a. |
| NCBI ID | WP_132994705.1 | Uniprot ID | - |
| Organism | Histophilus somni strain UOC-KLM-ATR-03 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1719584..1730927
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FWK44_RS08090 (FWK44_08090) | typA | 1720398..1722248 (+) | 1851 | WP_012341568.1 | translational GTPase TypA | - |
| FWK44_RS08095 (FWK44_08095) | rpsT | 1722310..1722573 (-) | 264 | WP_011608572.1 | 30S ribosomal protein S20 | - |
| FWK44_RS08100 (FWK44_08100) | murJ | 1722851..1724422 (+) | 1572 | WP_132994704.1 | murein biosynthesis integral membrane protein MurJ | - |
| FWK44_RS08105 (FWK44_08105) | pilA | 1724584..1725927 (-) | 1344 | WP_132994705.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| FWK44_RS08110 (FWK44_08110) | rsmD | 1725991..1726593 (+) | 603 | WP_012341564.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| FWK44_RS08115 (FWK44_08115) | dprA | 1726576..1727682 (-) | 1107 | WP_132994706.1 | DNA-processing protein DprA | Machinery gene |
| FWK44_RS08120 (FWK44_08120) | tsaD | 1727913..1728941 (+) | 1029 | WP_132994707.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| FWK44_RS08125 (FWK44_08125) | - | 1729003..1729590 (+) | 588 | WP_011608566.1 | thymidine kinase | - |
| FWK44_RS08130 (FWK44_08130) | - | 1729751..1730422 (+) | 672 | WP_132994708.1 | trimeric intracellular cation channel family protein | - |
Sequence
Protein
Download Length: 447 a.a. Molecular weight: 49837.30 Da Isoelectric Point: 4.4805
>NTDB_id=333435 FWK44_RS08105 WP_132994705.1 1724584..1725927(-) (pilA) [Histophilus somni strain UOC-KLM-ATR-03]
MSEEKKKGRFWSWLGLGQKTEDPISEQQPEQQSGQQESVAREQESTSNIEQVIKEPEHIDDTSSDLVLSAHLQEQEVKEY
SLHERELSQNTVIETESAVEKTDIFIEEDTTYQAINKEQREETTITSVKEVIPQEQEKPAENGFFSRLVKGLLKTKQNIG
IGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNS
KKPYVILMVGVNGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQS
AVARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDETAPHEIMLTLDSGTGQNAISQAKLFNEAVGLTGISLTKLDG
TAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEFIDALFVQEE
MSEEKKKGRFWSWLGLGQKTEDPISEQQPEQQSGQQESVAREQESTSNIEQVIKEPEHIDDTSSDLVLSAHLQEQEVKEY
SLHERELSQNTVIETESAVEKTDIFIEEDTTYQAINKEQREETTITSVKEVIPQEQEKPAENGFFSRLVKGLLKTKQNIG
IGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNS
KKPYVILMVGVNGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQS
AVARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDETAPHEIMLTLDSGTGQNAISQAKLFNEAVGLTGISLTKLDG
TAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEFIDALFVQEE
Nucleotide
Download Length: 1344 bp
>NTDB_id=333435 FWK44_RS08105 WP_132994705.1 1724584..1725927(-) (pilA) [Histophilus somni strain UOC-KLM-ATR-03]
ATGTCAGAAGAAAAGAAAAAAGGTAGATTTTGGTCTTGGTTAGGATTGGGGCAGAAAACAGAAGATCCGATATCAGAACA
GCAACCGGAGCAACAATCAGGACAACAGGAAAGTGTTGCAAGGGAGCAAGAATCTACTTCGAATATAGAGCAGGTTATAA
AAGAACCAGAGCATATTGATGACACTTCATCAGACTTGGTTTTATCCGCTCATTTACAGGAGCAAGAGGTAAAAGAATAC
TCACTTCATGAACGGGAACTGTCTCAAAATACTGTAATAGAAACAGAAAGTGCGGTTGAAAAAACAGATATTTTTATTGA
AGAGGATACAACATATCAGGCTATCAATAAGGAGCAGCGAGAGGAAACAACGATTACATCGGTTAAAGAAGTAATACCGC
AAGAACAAGAAAAACCGGCTGAAAATGGTTTTTTCAGTCGTTTAGTCAAAGGATTATTAAAAACCAAGCAAAATATCGGT
ATCGGTTTCCGCAGTTTGTTTTTGGGCAAGAAAATTGATGACGAGTTATTTGAGGAGTTAGAAGAACAACTATTGATCGC
TGATATCGGTGTGCCAACTACGACAAAAATCATCAATAATTTAATTCAGCATGCAAGCCGTAAACAATTGCAAGAGGCAG
ATTTACTTTATCAACAACTTAAAGTGGAATTAGCCGATATTTTAAAACCGGTCGAGCAACCTTTACAACTTGATAACAGT
AAAAAACCTTATGTTATCTTGATGGTTGGTGTAAATGGTGTGGGTAAAACCACTACAATCGGCAAATTGGCTAATCAATT
CCAAAGGCAAGGCAAATCCGTTATGTTGGCGGCAGGAGATACGTTCCGTGCTGCGGCTGTTGAGCAGCTTCAAGTTTGGG
GAGAACGTAACCAGATTCCTGTTATTGCACAAAGTACAGGTTCAGATTCTGCTTCTGTCATTTTTGATGCTATGCAATCG
GCAGTGGCACGTAATATTGATGTGCTTATTGCGGATACGGCTGGGCGTTTGCAGAATAAAAATAACCTGATGGATGAGTT
GAAAAAAATTGTTCGTGTGATAAAAAAATGTGATGAAACAGCACCGCATGAAATCATGCTAACTCTTGATAGTGGAACGG
GACAAAATGCAATTAGTCAAGCGAAATTGTTCAATGAAGCGGTAGGATTAACGGGTATTAGTCTAACCAAGTTGGATGGA
ACAGCAAAAGGCGGTGTTATTTTTGCGATTGCAGATCAATTTAATTTACCTATTCGCTATATTGGTGTCGGTGAGAAAAT
CGATGATTTACGCCCATTCCAAGCAGATGAATTTATTGACGCACTTTTTGTACAAGAAGAGTAA
ATGTCAGAAGAAAAGAAAAAAGGTAGATTTTGGTCTTGGTTAGGATTGGGGCAGAAAACAGAAGATCCGATATCAGAACA
GCAACCGGAGCAACAATCAGGACAACAGGAAAGTGTTGCAAGGGAGCAAGAATCTACTTCGAATATAGAGCAGGTTATAA
AAGAACCAGAGCATATTGATGACACTTCATCAGACTTGGTTTTATCCGCTCATTTACAGGAGCAAGAGGTAAAAGAATAC
TCACTTCATGAACGGGAACTGTCTCAAAATACTGTAATAGAAACAGAAAGTGCGGTTGAAAAAACAGATATTTTTATTGA
AGAGGATACAACATATCAGGCTATCAATAAGGAGCAGCGAGAGGAAACAACGATTACATCGGTTAAAGAAGTAATACCGC
AAGAACAAGAAAAACCGGCTGAAAATGGTTTTTTCAGTCGTTTAGTCAAAGGATTATTAAAAACCAAGCAAAATATCGGT
ATCGGTTTCCGCAGTTTGTTTTTGGGCAAGAAAATTGATGACGAGTTATTTGAGGAGTTAGAAGAACAACTATTGATCGC
TGATATCGGTGTGCCAACTACGACAAAAATCATCAATAATTTAATTCAGCATGCAAGCCGTAAACAATTGCAAGAGGCAG
ATTTACTTTATCAACAACTTAAAGTGGAATTAGCCGATATTTTAAAACCGGTCGAGCAACCTTTACAACTTGATAACAGT
AAAAAACCTTATGTTATCTTGATGGTTGGTGTAAATGGTGTGGGTAAAACCACTACAATCGGCAAATTGGCTAATCAATT
CCAAAGGCAAGGCAAATCCGTTATGTTGGCGGCAGGAGATACGTTCCGTGCTGCGGCTGTTGAGCAGCTTCAAGTTTGGG
GAGAACGTAACCAGATTCCTGTTATTGCACAAAGTACAGGTTCAGATTCTGCTTCTGTCATTTTTGATGCTATGCAATCG
GCAGTGGCACGTAATATTGATGTGCTTATTGCGGATACGGCTGGGCGTTTGCAGAATAAAAATAACCTGATGGATGAGTT
GAAAAAAATTGTTCGTGTGATAAAAAAATGTGATGAAACAGCACCGCATGAAATCATGCTAACTCTTGATAGTGGAACGG
GACAAAATGCAATTAGTCAAGCGAAATTGTTCAATGAAGCGGTAGGATTAACGGGTATTAGTCTAACCAAGTTGGATGGA
ACAGCAAAAGGCGGTGTTATTTTTGCGATTGCAGATCAATTTAATTTACCTATTCGCTATATTGGTGTCGGTGAGAAAAT
CGATGATTTACGCCCATTCCAAGCAGATGAATTTATTGACGCACTTTTTGTACAAGAAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.151 |
74.049 |
0.371 |