Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | BAA1790NC_RS03045 | Genome accession | NZ_CP042841 |
| Coordinates | 625501..626016 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain ATCC BAA-1790 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 620501..631016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAA1790NC_RS03020 (BAA1790NC_0602) | - | 621047..622690 (+) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
| BAA1790NC_RS03025 (BAA1790NC_0603) | - | 622683..623168 (+) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| BAA1790NC_RS03030 (BAA1790NC_0604) | - | 623251..623604 (+) | 354 | WP_000457787.1 | multidrug efflux SMR transporter | - |
| BAA1790NC_RS03035 (BAA1790NC_0605) | - | 623647..624090 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| BAA1790NC_RS03040 (BAA1790NC_0606) | - | 624217..625392 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| BAA1790NC_RS03045 (BAA1790NC_0607) | fimT | 625501..626016 (-) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| BAA1790NC_RS03050 (BAA1790NC_0608) | omp38 | 626398..627468 (+) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| BAA1790NC_RS03055 (BAA1790NC_0609) | - | 627593..627736 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| BAA1790NC_RS03060 (BAA1790NC_0610) | - | 627755..628960 (-) | 1206 | WP_000512707.1 | RtcB family protein | - |
| BAA1790NC_RS03065 (BAA1790NC_0611) | - | 629237..630697 (-) | 1461 | WP_000004973.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=331902 BAA1790NC_RS03045 WP_000477147.1 625501..626016(-) (fimT) [Acinetobacter baumannii strain ATCC BAA-1790]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=331902 BAA1790NC_RS03045 WP_000477147.1 625501..626016(-) (fimT) [Acinetobacter baumannii strain ATCC BAA-1790]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |