Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPPC_RS05615 Genome accession   NC_014555
Coordinates   1184520..1185569 (+) Length   349 a.a.
NCBI ID   WP_000115542.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179520..1190569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS05595 (HPPC_05800) - 1179610..1180353 (+) 744 WP_013356212.1 carbonic anhydrase -
  HPPC_RS05600 (HPPC_05805) - 1180587..1181690 (-) 1104 WP_000446644.1 DUF874 family protein -
  HPPC_RS05605 (HPPC_05810) asd 1182103..1183143 (-) 1041 WP_000860866.1 aspartate-semialdehyde dehydrogenase -
  HPPC_RS05610 (HPPC_05815) hisS 1183130..1184458 (-) 1329 WP_000632475.1 histidine--tRNA ligase -
  HPPC_RS05615 (HPPC_05820) waaF 1184520..1185569 (+) 1050 WP_000115542.1 lipopolysaccharide heptosyltransferase II Regulator
  HPPC_RS05620 (HPPC_05825) - 1185703..1185975 (-) 273 WP_000744165.1 hypothetical protein -
  HPPC_RS05625 (HPPC_05830) fusA 1186540..1188618 (-) 2079 WP_000101849.1 elongation factor G -
  HPPC_RS05630 (HPPC_05835) rpsG 1188630..1189097 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPPC_RS05635 (HPPC_05840) rpsL 1189113..1189520 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39424.16 Da        Isoelectric Point: 9.8576

>NTDB_id=33075 HPPC_RS05615 WP_000115542.1 1184520..1185569(+) (waaF) [Helicobacter pylori PeCan4]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQLFRSLFLSHAVISAPKDYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVTAALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITSLEVLQAARALLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=33075 HPPC_RS05615 WP_000115542.1 1184520..1185569(+) (waaF) [Helicobacter pylori PeCan4]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTGTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATTTCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTACGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATTGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAACCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTAGCCGCTAGCACGAAAACCCCCCTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAAAATGAAAAAAACCATTTGTGCATGAAATCTATCACGTCCCTTGAAGTCCTTCAAGCCGCTCGTGCTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364

Multiple sequence alignment