Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D5R83_RS02335 Genome accession   NZ_CP042211
Coordinates   455073..455339 (+) Length   88 a.a.
NCBI ID   WP_001173705.1    Uniprot ID   A0A8J3FT93
Organism   Helicobacter pylori strain B128 7.13     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450073..460339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R83_RS02315 (D5R83_02315) - 452148..452928 (+) 781 Protein_432 hypothetical protein -
  D5R83_RS02320 (D5R83_02320) - 452947..453240 (+) 294 WP_001160321.1 hypothetical protein -
  D5R83_RS02325 (D5R83_02325) - 453247..454773 (+) 1527 WP_000323325.1 hypothetical protein -
  D5R83_RS02330 (D5R83_02330) - 454770..455072 (+) 303 WP_000850076.1 hypothetical protein -
  D5R83_RS02335 (D5R83_02335) comB3 455073..455339 (+) 267 WP_001173705.1 hypothetical protein Machinery gene
  D5R83_RS08690 (D5R83_02345) - 455386..457755 (+) 2370 Protein_437 VirB4 family type IV secretion/conjugal transfer ATPase -
  D5R83_RS02350 (D5R83_02350) - 457758..459791 (+) 2034 WP_000655395.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10162.98 Da        Isoelectric Point: 4.8782

>NTDB_id=330430 D5R83_RS02335 WP_001173705.1 455073..455339(+) (comB3) [Helicobacter pylori strain B128 7.13]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=330430 D5R83_RS02335 WP_001173705.1 455073..455339(+) (comB3) [Helicobacter pylori strain B128 7.13]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8J3FT93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398