NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	FP478_RS09560	Genome accession	NZ_CP042043
Coordinates	1936344..1937030 (-)	Length	228 a.a.
NCBI ID	WP_000692872.1	Uniprot ID	-
Organism	Staphylococcus aureus strain B2-15A
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1931344..1942030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FP478_RS09515 (FP478_09515)	rpmA	1932115..1932399 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
FP478_RS09520 (FP478_09520)	-	1932411..1932731 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
FP478_RS09525 (FP478_09525)	rplU	1932737..1933045 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
FP478_RS09530 (FP478_09530)	mreD	1933281..1933811 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
FP478_RS09535 (FP478_09535)	mreC	1933811..1934653 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
FP478_RS09540 (FP478_09540)	-	1934852..1934971 (-)	120	WP_000840602.1	hypothetical protein	-
FP478_RS09545 (FP478_09545)	-	1935045..1935518 (-)	474	WP_001236734.1	DUF4930 family protein	-
FP478_RS09550 (FP478_09550)	-	1935678..1935875 (+)	198	WP_000025835.1	hypothetical protein	-
FP478_RS09555 (FP478_09555)	-	1935992..1936276 (-)	285	WP_000171857.1	hypothetical protein	-
FP478_RS09560 (FP478_09560)	ysxA/radC	1936344..1937030 (-)	687	WP_000692872.1	RadC family protein	Machinery gene
FP478_RS09565 (FP478_09565)	-	1937027..1937734 (-)	708	WP_000261115.1	prepilin peptidase	-
FP478_RS09570 (FP478_09570)	-	1938004..1939275 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
FP478_RS09575 (FP478_09575)	-	1939288..1941918 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25326.30 Da Isoelectric Point: 7.4360

                                >NTDB_id=330046 FP478_RS09560 WP_000692872.1 1936344..1937030(-) (ysxA/radC) [Staphylococcus aureus strain B2-15A]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGKDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=330046 FP478_RS09560 WP_000692872.1 1936344..1937030(-) (ysxA/radC) [Staphylococcus aureus strain B2-15A]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGAAAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.232	98.246	0.513
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373

Detailed information NTG0330046