Detailed information NTG0328094

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: FGF55_RS15805
• Genome accession: NZ_CP041691
• Coordinates: 3178466..3179593 (-)
• Length: 375 a.a.
• NCBI ID: WP_014418805.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZJU1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3173466..3184593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGF55_RS15785 (FGF55_15785)	-	3173715..3174566 (-)	852	WP_014418802.1	DUF72 domain-containing protein	-
FGF55_RS15790 (FGF55_15790)	-	3174593..3174946 (-)	354	WP_007408736.1	hypothetical protein	-
FGF55_RS15795 (FGF55_15795)	-	3175019..3176383 (-)	1365	WP_014418803.1	allantoinase	-
FGF55_RS15800 (FGF55_15800)	-	3176563..3178158 (+)	1596	WP_014418804.1	PucR family transcriptional regulator	-
FGF55_RS15805 (FGF55_15805)	rapC	3178466..3179593 (-)	1128	WP_014418805.1	Rap family tetratricopeptide repeat protein	Regulator
FGF55_RS20570 (FGF55_15810)	-	3179729..3179908 (-)	180	WP_032863911.1	hypothetical protein	-
FGF55_RS15815 (FGF55_15815)	-	3180033..3181166 (-)	1134	WP_014418806.1	hypothetical protein	-
FGF55_RS15820 (FGF55_15820)	-	3181224..3182420 (-)	1197	WP_014418807.1	tetracycline resistance MFS efflux pump	-
FGF55_RS15825 (FGF55_15825)	-	3182542..3183795 (-)	1254	WP_014418808.1	alanine--glyoxylate aminotransferase family protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 43728.78 Da
• Isoelectric Point: 5.8205

>NTDB_id=328094 FGF55_RS15805 WP_014418805.1 3178466..3179593(-) (rapC) [Bacillus amyloliquefaciens strain ZJU1]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYKEAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYCDFKRYEKSQPHLEKALKLSKELDNSRLISSALYNLGANYADRGEHSQAEN
FLKQAVEITEKAKLSNLPHSLFSYAKVLFKQGKMAEGMQASKKGLSAAVSQGDKLFESLQGYLKALYVDAVNQQGINDTI
EYLEKNKNYSYVEDIACETASIYADSKEFETSYFYHKKMVDTQTQIQRGECLYEF

Nucleotide

• Length: 1128 bp

>NTDB_id=328094 FGF55_RS15805 WP_014418805.1 3178466..3179593(-) (rapC) [Bacillus amyloliquefaciens strain ZJU1]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATTGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAAAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
GAATTATTGTGATTTTAAACGTTATGAGAAGAGTCAGCCGCACCTTGAAAAGGCTCTTAAATTATCGAAAGAGTTAGATA
ATAGTAGGTTGATTAGTTCTGCTCTTTATAATTTGGGTGCAAATTACGCTGATAGGGGAGAACATTCACAGGCTGAAAAC
TTCTTGAAACAAGCTGTTGAAATTACAGAAAAAGCAAAGCTGAGTAACTTACCTCATTCCTTGTTTTCTTATGCGAAGGT
TCTTTTTAAACAAGGGAAAATGGCTGAAGGAATGCAAGCGAGTAAGAAAGGATTATCGGCAGCAGTATCCCAAGGGGATA
AGCTTTTTGAGTCACTACAAGGCTATCTCAAAGCTCTTTATGTAGACGCTGTGAATCAGCAAGGGATAAACGATACGATC
GAATACCTGGAGAAAAATAAGAATTATTCATATGTTGAAGACATCGCCTGTGAAACTGCTTCGATTTATGCAGATTCAAA
GGAATTTGAAACGTCTTATTTTTATCATAAAAAAATGGTAGATACGCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
AATTTTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.18	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	38.889	100	0.392