Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   FGF55_RS02180 Genome accession   NZ_CP041691
Coordinates   433241..433675 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 428241..438675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS02150 (FGF55_02150) - 428915..429775 (+) 861 WP_014720729.1 SDR family oxidoreductase -
  FGF55_RS02155 (FGF55_02155) - 429788..430291 (+) 504 WP_014416931.1 D-lyxose/D-mannose family sugar isomerase -
  FGF55_RS02160 (FGF55_02160) - 430379..431002 (+) 624 WP_014416932.1 GNAT family protein -
  FGF55_RS02165 (FGF55_02165) - 431009..431431 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  FGF55_RS02170 (FGF55_02170) - 431928..432737 (+) 810 WP_014416933.1 lipid II flippase Amj family protein -
  FGF55_RS02175 (FGF55_02175) - 432775..433065 (-) 291 WP_014416934.1 DUF3817 domain-containing protein -
  FGF55_RS02180 (FGF55_02180) lrpC 433241..433675 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  FGF55_RS02185 (FGF55_02185) - 433739..435925 (+) 2187 WP_003156261.1 DNA topoisomerase III -
  FGF55_RS02190 (FGF55_02190) - 436158..437243 (+) 1086 WP_014416936.1 hypothetical protein -
  FGF55_RS02195 (FGF55_02195) - 437224..438072 (+) 849 WP_014416937.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=327995 FGF55_RS02180 WP_007410180.1 433241..433675(+) (lrpC) [Bacillus amyloliquefaciens strain ZJU1]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=327995 FGF55_RS02180 WP_007410180.1 433241..433675(+) (lrpC) [Bacillus amyloliquefaciens strain ZJU1]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGTGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGACTTCCCGTTTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792

Multiple sequence alignment