Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPB8_RS02325 Genome accession   NC_014256
Coordinates   455229..455495 (+) Length   88 a.a.
NCBI ID   WP_001173705.1    Uniprot ID   A0A8J3FT93
Organism   Helicobacter pylori B8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450229..460495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS02305 (HPB8_482) - 452304..453084 (+) 781 Protein_432 hypothetical protein -
  HPB8_RS02310 (HPB8_483) - 453103..453396 (+) 294 WP_001160321.1 hypothetical protein -
  HPB8_RS02315 (HPB8_484) - 453403..454929 (+) 1527 WP_000323325.1 hypothetical protein -
  HPB8_RS02320 - 454926..455228 (+) 303 WP_000850076.1 hypothetical protein -
  HPB8_RS02325 comB3 455229..455495 (+) 267 WP_001173705.1 hypothetical protein Machinery gene
  HPB8_RS02335 (HPB8_486) - 455542..457910 (+) 2369 Protein_437 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPB8_RS02340 (HPB8_487) - 457913..459946 (+) 2034 WP_000655395.1 type IA DNA topoisomerase -
  HPB8_RS09155 (HPB8_488) - 460138..460437 (+) 300 WP_000366737.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10162.98 Da        Isoelectric Point: 4.8782

>NTDB_id=32742 HPB8_RS02325 WP_001173705.1 455229..455495(+) (comB3) [Helicobacter pylori B8]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=32742 HPB8_RS02325 WP_001173705.1 455229..455495(+) (comB3) [Helicobacter pylori B8]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8J3FT93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment