Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FNV66_RS15980 Genome accession   NZ_CP041607
Coordinates   3155860..3156501 (-) Length   213 a.a.
NCBI ID   WP_054232215.1    Uniprot ID   A0ABU3UWW6
Organism   Streptomyces sp. S1D4-14     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3150860..3161501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV66_RS15950 (FNV66_16170) - 3151347..3151853 (+) 507 WP_054230568.1 HNH endonuclease -
  FNV66_RS15955 (FNV66_16175) - 3151934..3152869 (-) 936 WP_054230569.1 SPFH domain-containing protein -
  FNV66_RS15960 (FNV66_16180) - 3153001..3153435 (-) 435 WP_054230570.1 NfeD family protein -
  FNV66_RS15965 (FNV66_16185) - 3153509..3154300 (-) 792 WP_054230572.1 ABC transporter ATP-binding protein -
  FNV66_RS15970 (FNV66_16190) - 3154422..3155210 (+) 789 WP_054230571.1 hypothetical protein -
  FNV66_RS15975 (FNV66_16195) - 3155455..3155700 (-) 246 WP_054232214.1 chaplin -
  FNV66_RS15980 (FNV66_16200) vraR 3155860..3156501 (-) 642 WP_054232215.1 response regulator transcription factor Regulator
  FNV66_RS15985 (FNV66_16205) - 3156494..3157663 (-) 1170 WP_143601239.1 GAF domain-containing sensor histidine kinase -
  FNV66_RS15990 (FNV66_16210) - 3157852..3158547 (+) 696 WP_143601240.1 SDR family oxidoreductase -
  FNV66_RS15995 (FNV66_16215) - 3158544..3159650 (+) 1107 WP_143601241.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  FNV66_RS16000 (FNV66_16220) - 3159950..3160723 (+) 774 WP_143601242.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22839.14 Da        Isoelectric Point: 5.3711

>NTDB_id=327091 FNV66_RS15980 WP_054232215.1 3155860..3156501(-) (vraR) [Streptomyces sp. S1D4-14]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELKPDVVLMDVKMPGMDGIDALRKLRELANPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGVLLSQEEANSGQGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=327091 FNV66_RS15980 WP_054232215.1 3155860..3156501(-) (vraR) [Streptomyces sp. S1D4-14]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAAGTGGTCCGCCGGGGCCTGCGCACCTTTCTCGAAGTGCA
GGACGACATCGAGGTCGTGGGCGAGGCGTCCGACGGCGCCGAAGGGGTCGCCCGCGCCGAGGAACTGAAGCCCGACGTCG
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCATCGACGCGCTGCGCAAGCTCCGTGAACTGGCCAACCCCGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAACAGCGCACGGTCGTCCCGGCCCTGCGCGCGGGCGCCGCCGGCTATGTCTACAA
GGACGTGGACCCCGACGCCCTCGCCGGAGCCATCCGCTCGGTGCACGCCGGGCACATCCTGCTCCAGCCCGAGGTGGCGG
GCGTCCTGCTGTCCCAGGAGGAGGCCAACTCGGGGCAGGGGAGAGGCGGCTCGCTCACCGAACGGGAGCGCGAGGTGCTC
GGCCTGATCGCGGACGGCCGCTCCAACCGGGAAATCGCACGCGCGCTCGTCCTCTCCGAGAAGACCGTCAAGACGCATGT
CTCGAACATCCTGATGAAGCTCGACCTCGCCGACCGCACACAGGCCGCGCTCTGGGCCGTACGCCATGGGGCGGCGGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.714

98.592

0.451
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.394