Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | FIM01_RS03195 | Genome accession | NZ_CP041035 |
| Coordinates | 659966..660481 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain 11W359501 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 654966..665481
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIM01_RS03170 (FIM01_03170) | - | 655512..657155 (+) | 1644 | WP_000281764.1 | nitrite/sulfite reductase | - |
| FIM01_RS03175 (FIM01_03175) | - | 657148..657633 (+) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| FIM01_RS03180 (FIM01_03180) | - | 657716..658069 (+) | 354 | WP_000457783.1 | DMT family transporter | - |
| FIM01_RS03185 (FIM01_03185) | - | 658112..658555 (-) | 444 | WP_001176585.1 | VOC family protein | - |
| FIM01_RS03190 (FIM01_03190) | - | 658682..659857 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| FIM01_RS03195 (FIM01_03195) | fimT | 659966..660481 (-) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| FIM01_RS03200 (FIM01_03200) | omp38 | 660861..661922 (+) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| FIM01_RS20405 | - | 662045..662203 (-) | 159 | WP_000692859.1 | hypothetical protein | - |
| FIM01_RS03205 (FIM01_03205) | - | 662207..663412 (-) | 1206 | WP_000512708.1 | RtcB family protein | - |
| FIM01_RS03210 (FIM01_03210) | - | 663690..665150 (-) | 1461 | WP_000004974.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=324571 FIM01_RS03195 WP_000477151.1 659966..660481(-) (fimT) [Acinetobacter baumannii strain 11W359501]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=324571 FIM01_RS03195 WP_000477151.1 659966..660481(-) (fimT) [Acinetobacter baumannii strain 11W359501]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |