Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   SMUNN2025_RS06905 Genome accession   NC_013928
Coordinates   1418651..1419598 (-) Length   315 a.a.
NCBI ID   WP_002277935.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1413651..1424598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS06885 (SmuNN2025_1340) prsA 1414186..1415187 (-) 1002 WP_002275165.1 peptidylprolyl isomerase PrsA -
  SMUNN2025_RS06890 (SmuNN2025_1341) - 1415249..1415956 (-) 708 WP_002273046.1 O-methyltransferase -
  SMUNN2025_RS06895 (SmuNN2025_1342) - 1416006..1416623 (-) 618 WP_002283196.1 HAD-IA family hydrolase -
  SMUNN2025_RS06900 (SmuNN2025_1343) pepF 1416840..1418639 (-) 1800 WP_002283195.1 oligoendopeptidase F Regulator
  SMUNN2025_RS06905 (SmuNN2025_1344) coiA 1418651..1419598 (-) 948 WP_002277935.1 competence protein CoiA Machinery gene
  SMUNN2025_RS06910 (SmuNN2025_1345) - 1419904..1420797 (-) 894 WP_002271023.1 alpha/beta hydrolase -
  SMUNN2025_RS10365 - 1420903..1421184 (-) 282 Protein_1338 hypothetical protein -
  SMUNN2025_RS10370 - 1421269..1421396 (+) 128 Protein_1339 ArsR/SmtB family transcription factor -
  SMUNN2025_RS06915 (SmuNN2025_1346) - 1421429..1422397 (-) 969 WP_002277936.1 alcohol dehydrogenase catalytic domain-containing protein -
  SMUNN2025_RS06920 (SmuNN2025_1347) - 1422525..1423898 (+) 1374 WP_002277937.1 PLP-dependent aminotransferase family protein -
  SMUNN2025_RS06925 (SmuNN2025_1348) - 1423988..1424488 (-) 501 WP_002277938.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 37075.50 Da        Isoelectric Point: 8.9051

>NTDB_id=32432 SMUNN2025_RS06905 WP_002277935.1 1418651..1419598(-) (coiA) [Streptococcus mutans NN2025]
MLVARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQANGYQVLWLLGEKLWLDRRLSSLYKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKEIQTLYPPAFYDKMNKKL

Nucleotide


Download         Length: 948 bp        

>NTDB_id=32432 SMUNN2025_RS06905 WP_002277935.1 1418651..1419598(-) (coiA) [Streptococcus mutans NN2025]
ATGTTAGTTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCGCCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCCGAAGCTCGTCTGTGTGAGCGAACGCAGGCCTATCAGGCCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAGCTTGTACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAGAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAATAAAAAGTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

47.249

98.095

0.463

  coiA Streptococcus pneumoniae Rx1

46.278

98.095

0.454

  coiA Streptococcus pneumoniae D39

46.278

98.095

0.454

  coiA Streptococcus pneumoniae R6

46.278

98.095

0.454

  coiA Streptococcus pneumoniae TIGR4

45.955

98.095

0.451

  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.41


Multiple sequence alignment