Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EFI48_RS01900 Genome accession   NZ_CP033604
Coordinates   402124..403563 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain MS-18-37     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397124..408563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFI48_RS01870 (EFI48_01870) mlaF 397701..398501 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  EFI48_RS01875 (EFI48_01875) - 398709..399704 (+) 996 WP_123172219.1 KpsF/GutQ family sugar-phosphate isomerase -
  EFI48_RS01880 (EFI48_01880) kdsC 399704..400258 (+) 555 WP_047438734.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  EFI48_RS01885 (EFI48_01885) lptC 400255..400815 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  EFI48_RS01890 (EFI48_01890) lptA 400802..401329 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  EFI48_RS01895 (EFI48_01895) lptB 401333..402058 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  EFI48_RS01900 (EFI48_01900) rpoN/rpoN1 402124..403563 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  EFI48_RS01905 (EFI48_01905) hpf 403584..403871 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  EFI48_RS01910 (EFI48_01910) ptsN 403874..404320 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  EFI48_RS01915 (EFI48_01915) rapZ 404366..405232 (+) 867 WP_123172220.1 RNase adapter RapZ -
  EFI48_RS01920 (EFI48_01920) npr 405253..405525 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  EFI48_RS01925 (EFI48_01925) - 405543..407447 (-) 1905 WP_123172221.1 BglG family transcription antiterminator -
  EFI48_RS01930 (EFI48_01930) dagF 407555..408295 (-) 741 WP_123172222.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=324256 EFI48_RS01900 WP_005336331.1 402124..403563(+) (rpoN/rpoN1) [Aeromonas veronii strain MS-18-37]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=324256 EFI48_RS01900 WP_005336331.1 402124..403563(+) (rpoN/rpoN1) [Aeromonas veronii strain MS-18-37]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAAGAGCAGATGCCG
GATGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATCTGTTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCAGTCACTAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCGGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAATATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCATATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCTAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491

Multiple sequence alignment