Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EEB07_RS03290 Genome accession   NZ_CP033576
Coordinates   613252..614004 (-) Length   250 a.a.
NCBI ID   WP_063636761.1    Uniprot ID   A0A7W4LWP0
Organism   Bacillus velezensis strain NY12-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 608252..619004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEB07_RS03265 (EEB07_03265) mreC 608688..609551 (-) 864 WP_016938781.1 rod shape-determining protein MreC -
  EEB07_RS03270 (EEB07_03270) mreB 609582..610595 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  EEB07_RS03275 (EEB07_03275) radC 610687..611382 (-) 696 WP_007408165.1 DNA repair protein RadC -
  EEB07_RS03280 (EEB07_03280) - 611414..611983 (-) 570 WP_123117372.1 Maf family protein -
  EEB07_RS03285 (EEB07_03285) - 612124..613125 (-) 1002 WP_123117373.1 SPOR domain-containing protein -
  EEB07_RS03290 (EEB07_03290) comC 613252..614004 (-) 753 WP_063636761.1 A24 family peptidase Machinery gene
  EEB07_RS03295 (EEB07_03295) - 614145..615437 (-) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  EEB07_RS03300 (EEB07_03300) - 615496..618138 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  EEB07_RS03305 (EEB07_03305) - 618591..618782 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27160.87 Da        Isoelectric Point: 9.2521

>NTDB_id=324036 EEB07_RS03290 WP_063636761.1 613252..614004(-) (comC) [Bacillus velezensis strain NY12-2]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=324036 EEB07_RS03290 WP_063636761.1 613252..614004(-) (comC) [Bacillus velezensis strain NY12-2]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGTCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4LWP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

99.2

0.572

Multiple sequence alignment