Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   FHI56_RS03635 Genome accession   NZ_CP040804
Coordinates   493990..497643 (+) Length   1217 a.a.
NCBI ID   WP_149561181.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 488990..502643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS03625 (FHI56_03625) - 489057..490430 (+) 1374 WP_045769179.1 GHKL domain-containing protein -
  FHI56_RS03630 (FHI56_03630) rexB 490681..494000 (+) 3320 Protein_473 ATP-dependent nuclease subunit B -
  FHI56_RS03635 (FHI56_03635) rexA 493990..497643 (+) 3654 WP_149561181.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FHI56_RS03640 (FHI56_03640) - 497996..498727 (-) 732 WP_013991143.1 DUF554 domain-containing protein -
  FHI56_RS03645 (FHI56_03645) - 499004..499735 (+) 732 WP_045772452.1 ABC transporter ATP-binding protein -
  FHI56_RS03650 (FHI56_03650) - 499738..501327 (+) 1590 WP_045769183.1 hypothetical protein -
  FHI56_RS03655 (FHI56_03655) proB 501447..502250 (+) 804 WP_014632637.1 glutamate 5-kinase -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138117.31 Da        Isoelectric Point: 4.7597

>NTDB_id=323549 FHI56_RS03635 WP_149561181.1 493990..497643(+) (rexA) [Streptococcus salivarius strain LAB813]
MLTKAFLSPTEIKERIAQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYSFSQATAGPEKWLRQNLLKGQAEANPNKAKAELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILED
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHPENETEVLIYNSDEASVTPDEESADQPISSGE
ISLVIKEIIKLHEQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKILAAHTKSGLHPEVVTQGLEAKLTLFIEILSDWRYYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRTEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQVNTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEDLTPEAI
GQVEVQAAVDADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIELPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETTTSFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTQPGELKDRYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKNLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=323549 FHI56_RS03635 WP_149561181.1 493990..497643(+) (rexA) [Streptococcus salivarius strain LAB813]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGCATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCAGAGCAGATTGAGGCCATTTACAGTAATGGTAGCAATATTCTTGTATCAGCTTCGGCTGGATCAGGAAAAA
CCTTTGTTATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGCATTGATCAACTCTTTATCTCAACCTTTACG
GTAAAGGCCGCGGGTGAGTTAAAAGAGCGTCTGGAAAAGCGTTTGACAGAGCAGTTGGGACAGGTTGAGACGGATGAAGA
GCGTGCCTTTCTTTCAGATCAGATTGCCAAGATTGGAACGGCTGATATTGGAACCATGGATGCCTTTACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGTGTGTCACCTATTTTCCGCATTATGACAGATCCTGCTGAGCAGACACTCATGAAA
AATGAGGTTTATGCCGATCTTTTCAACGATTATATGCAAGGGAAGGATGCCCAACTTTTCCAAAAATTGGTCCGTAACTT
TGCTGGAAATGGCAAGACTAGTAAGGCCTTTCGTGATTTAGTTTACGATGTCTATAGCTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAAAATCTTTTAAAAGGGCAGGCAGAGGCCAATCCAAACAAGGCTAAAGCTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGACCATCTAGGCCTAGCTCAGCGTGAATTTGCCAA
GGCTAAGTATCTTAATAATGTGTCGGATGCCATTAGCCTTCTTGAAGGAGCCTTGGCCAATGACCAAACGGATATGGAGG
ACTTGCTCAAACAACTCTTGACTTTGTCAGGAGGTACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCTCAGTTGCGAGAGGTTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTACTTGATTTTTCGGACC
AGTATTTACAGGCAAAGATTCAGGAAAATGCTTTTGAATTCTCAGATATTGCCCATTTTGCTATCCGTATTTTGGAGGAT
AATCCAGAGGTGGCAGCTAGCTACCGTGACCGTTACCATGAAGTAATGGTAGACGAGTATCAGGACAATAGCCATACCCA
AGAACGCATGTTGGAGCTCCTCTCTAACGGCCACAACCGATTCATGGTGGGAGATATCAAACAATCCATCTATCGTTTCC
GTCAGGCGGATCCTCAGATTTTTAACGGCAAGTTTCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGTTGATTCTCCTT
AAAGAGAACTTCCGTAGCCAATCTGAGGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGACCAGGAAATCGG
AGATATCCTCTATGACAAGACGCATATGTTGGTAGCAGGTAGCGAGAAGCAAAAAGAACCCCATCCTGAAAATGAGACAG
AGGTTCTGATTTACAATAGTGATGAAGCAAGTGTGACTCCTGATGAGGAAAGTGCTGATCAACCTATTAGTAGCGGCGAG
ATTTCCTTGGTTATCAAAGAAATCATCAAACTTCACGAGCAGGGTGTACGTTTTGAGGATATTACCCTCCTAGCACCAAC
TCGCAACACCTATCTGGACTTGATGGCAAGCTTTGAGGAGCACGGAATTCCCTTGGTACCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGACACCCTTCGTGCCATCAATAATCCTCTCAATGACTATGCCTTGGTT
GCCCTCCTTCGTTCACCTATGTTTAACTTCAACGAGGACGACCTGGCTAGGATCGCTGTCCAGGCTGACAAAGGACAATT
CTATGACAAGATTCTTGCAGCTCATACTAAATCAGGACTTCATCCAGAAGTCGTGACGCAAGGACTGGAGGCCAAGTTGA
CTCTCTTCATTGAGATTCTTTCAGATTGGCGTTATTACAGTAAGTGGCACTCGCTTTACGACCTCATTTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTCGGCAGTCTTCCACGAACTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGCTTTAAGGGACTTTCTCGTTTTATTGGCATGATTGATAAGATTATTTCTAGCG
GTAACGACCTAGAGGAAGTAACAGACTTGGTTCCCAAAAATGCCGTTAGCCTTATGACCATTCACAAGTCCAAGGGACTA
GAGTTCAAGTATGTCTTTGTCTTGCAGATGAATCGCAAGTTCATTGGTCACAGCAAGGACGGACTGAGTGGTAAGTACAT
CATTAACCGTGAAAAAGGACTAGGCATTAAGTATCTAGCTGACCTCAAAGACCAGGTAAACACTAATTTGCCTAAGTTAA
ATGTTGTTCTTGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAGCGTCGAGCAAGTATCTCAGAAGAGATGCGTCTA
CTCTATGTTGCAATGACCCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGTAGTAAGGAAAAATTGACCCAGCAATT
TGGCACGGATGTTGAAAATAATCGCCTACCAGTAGCTCTACGTGACCAAATTGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACTGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGACTTGACCCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCGGCAGTAGATGCTGATGATCTCTCTAACAATCGCCAGACGGAAGACATTAAGCGTGCCCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAATCAACTTTATGCACCAGCGATTGAACTTCCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTCATGGATACCGAAGGGGTGGATATTATGGACAAGAAAGAGGAGGTGCAACCTCTT
GAGACTACCACTAGCTTTGAGCTTCCAGATTTTGGGCAAAAAACCAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCCTTGAGTCGAGTATCGGCAG
ATGATCAAGTCAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGATAAGTTGCGTCGCGAAGCGCCATTTGCCATGTTGGCAGAAGACCCGGCTAGTAAGGAAGACTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACAGACCGCTTCACTCAACCTG
GTGAGCTTAAGGACCGCTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAAACTTGGAAGTTGTAGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.184

100

0.515