Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   EAE30_RS00470 Genome accession   NZ_CP033077
Coordinates   87842..88897 (+) Length   351 a.a.
NCBI ID   WP_241967623.1    Uniprot ID   -
Organism   Vibrio zhugei strain HBUAS61001     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 84848..87120 87842..88897 flank 722


Gene organization within MGE regions


Location: 84848..88897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAE30_RS00450 - 86178..86390 (-) 213 Protein_82 IS66 family transposase -
  EAE30_RS00455 tnpB 86450..86803 (-) 354 WP_164711753.1 IS66 family insertion sequence element accessory protein TnpB -
  EAE30_RS00460 - 86800..87120 (-) 321 Protein_84 IS66 family insertion sequence element accessory protein TnpB -
  EAE30_RS00465 - 87434..87610 (+) 177 Protein_85 conjugal transfer protein TraF -
  EAE30_RS00470 luxP 87842..88897 (+) 1056 WP_241967623.1 substrate-binding domain-containing protein Regulator

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40160.52 Da        Isoelectric Point: 6.4175

>NTDB_id=321201 EAE30_RS00470 WP_241967623.1 87842..88897(+) (luxP) [Vibrio zhugei strain HBUAS61001]
MSLPTDASQSLKGYWHYQEYLELNPEQQTLTQSLSDMVHQPAVPLNRPQQKPVTISVIYPGSQVSDYWVRNIKAFELRME
ELGIRYTINQVFTRPNVDARQQSLSLMEALKDKSQYLIFTLNTVRHRKFIEHVLQSSATKIMLQNITTPVKAWKDHQPMM
YVGFDHEMGTKRLADYFSQVEPTDSRYAMLYYSEGYISAARGDTFIEQMHQRGNYQLMDSYYTDATEQGGYDATMHILDT
DSNIQFIYACSTDIALGAMKALEKRGKQHIKLNGWGGGTAELNAILAGKLDATVMRMNDDTGVAMAEAIKLDLEGKPVPT
VYSGQFQLVTKEDSPERIRQLEKQAFRYSDR

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=321201 EAE30_RS00470 WP_241967623.1 87842..88897(+) (luxP) [Vibrio zhugei strain HBUAS61001]
ATGAGCTTGCCTACTGATGCATCACAAAGTCTCAAAGGATACTGGCACTACCAAGAATATCTCGAACTGAACCCTGAACA
GCAAACACTGACCCAGAGCTTGAGTGATATGGTTCATCAACCGGCGGTGCCATTGAATCGGCCACAGCAAAAGCCAGTCA
CCATTTCTGTTATTTATCCGGGTAGCCAAGTCTCTGATTACTGGGTACGTAATATCAAGGCGTTTGAATTACGTATGGAA
GAGCTTGGAATTCGTTACACCATTAATCAAGTGTTCACTCGGCCCAATGTCGATGCTCGCCAACAAAGTTTATCTTTAAT
GGAAGCACTGAAAGATAAGTCTCAATATTTAATTTTCACGCTCAATACGGTACGGCATCGCAAGTTTATTGAACATGTAC
TTCAGTCTTCGGCAACCAAGATCATGTTGCAAAATATCACGACACCGGTGAAAGCCTGGAAGGATCATCAGCCAATGATG
TATGTTGGCTTTGACCATGAGATGGGAACGAAGCGTCTTGCGGATTATTTCAGCCAAGTCGAGCCGACGGACAGTCGCTA
TGCCATGTTGTATTATTCAGAAGGCTACATCAGTGCAGCACGAGGTGATACGTTTATTGAACAGATGCATCAACGCGGCA
ATTACCAGTTAATGGACTCGTATTATACTGATGCCACGGAACAAGGTGGCTACGATGCCACGATGCACATTTTGGACACG
GATTCGAATATCCAATTTATTTACGCGTGCTCTACTGATATTGCCTTAGGGGCAATGAAAGCGTTAGAAAAGCGTGGCAA
GCAGCACATTAAGCTTAATGGATGGGGCGGTGGTACGGCTGAGTTAAACGCGATTCTCGCGGGTAAGTTGGATGCGACAG
TCATGCGCATGAACGACGATACCGGGGTGGCTATGGCCGAAGCCATCAAACTGGATTTAGAAGGCAAACCTGTCCCTACT
GTCTACTCTGGCCAGTTTCAACTGGTGACCAAAGAAGACAGTCCAGAGCGTATTCGTCAGTTAGAGAAGCAAGCTTTTCG
CTACTCTGACCGTTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(56-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.112

98.86

0.624

Multiple sequence alignment