Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BCB4264_RS19315 Genome accession   NC_011725
Coordinates   3847843..3848622 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus B4264     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3822547..3884309 3847843..3848622 within 0


Gene organization within MGE regions


Location: 3822547..3884309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCB4264_RS19205 (BCB4264_A3904) - 3823118..3824017 (-) 900 WP_000868225.1 polysaccharide deacetylase family protein -
  BCB4264_RS19210 (BCB4264_A3905) pnp 3824171..3826309 (-) 2139 WP_000076740.1 polyribonucleotide nucleotidyltransferase -
  BCB4264_RS19215 (BCB4264_A3906) rpsO 3826470..3826739 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  BCB4264_RS19220 (BCB4264_A3907) ribF 3826840..3827811 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  BCB4264_RS19225 (BCB4264_A3908) truB 3827855..3828778 (-) 924 WP_000399350.1 tRNA pseudouridine(55) synthase TruB -
  BCB4264_RS19230 (BCB4264_A3909) rbfA 3828865..3829221 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  BCB4264_RS19235 (BCB4264_A3910) - 3829237..3829518 (-) 282 WP_000582363.1 DUF503 family protein -
  BCB4264_RS19240 (BCB4264_A3911) infB 3829515..3831575 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  BCB4264_RS19245 (BCB4264_A3912) - 3831580..3831891 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  BCB4264_RS19250 (BCB4264_A3913) - 3831892..3832164 (-) 273 WP_000071127.1 YlxR family protein -
  BCB4264_RS19255 (BCB4264_A3914) nusA 3832176..3833282 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  BCB4264_RS19260 (BCB4264_A3915) rimP 3833300..3833770 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  BCB4264_RS19265 (BCB4264_A3916) - 3834107..3838408 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  BCB4264_RS19270 (BCB4264_A3917) - 3838533..3840233 (-) 1701 WP_000814300.1 proline--tRNA ligase -
  BCB4264_RS19275 (BCB4264_A3918) rseP 3840343..3841599 (-) 1257 WP_001090243.1 RIP metalloprotease RseP -
  BCB4264_RS19280 (BCB4264_A3919) dxr 3841617..3842759 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  BCB4264_RS19285 (BCB4264_A3920) cdsA 3842783..3843574 (-) 792 WP_000813594.1 phosphatidate cytidylyltransferase -
  BCB4264_RS19290 (BCB4264_A3921) uppS 3843592..3844368 (-) 777 WP_000971296.1 isoprenyl transferase -
  BCB4264_RS19295 (BCB4264_A3922) frr 3844454..3845011 (-) 558 WP_000531501.1 ribosome recycling factor -
  BCB4264_RS19300 (BCB4264_A3923) pyrH 3845014..3845736 (-) 723 WP_000042668.1 UMP kinase -
  BCB4264_RS19305 (BCB4264_A3924) tsf 3845803..3846690 (-) 888 WP_001018578.1 translation elongation factor Ts -
  BCB4264_RS19310 (BCB4264_A3925) rpsB 3846794..3847495 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  BCB4264_RS19315 (BCB4264_A3926) codY 3847843..3848622 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BCB4264_RS19320 (BCB4264_A3927) hslU 3848700..3850091 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  BCB4264_RS19325 (BCB4264_A3928) hslV 3850114..3850656 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  BCB4264_RS19330 (BCB4264_A3929) xerC 3850699..3851598 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  BCB4264_RS19335 (BCB4264_A3930) trmFO 3851664..3852968 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BCB4264_RS19340 (BCB4264_A3931) topA 3853017..3855095 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  BCB4264_RS19345 (BCB4264_A3932) dprA 3855240..3856109 (-) 870 WP_000818043.1 DNA-processing protein DprA -
  BCB4264_RS19350 (BCB4264_A3933) sucD 3856198..3857100 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  BCB4264_RS19355 (BCB4264_A3934) sucC 3857120..3858280 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  BCB4264_RS19360 (BCB4264_A3935) - 3858475..3859248 (-) 774 WP_001194260.1 ribonuclease HII -
  BCB4264_RS19365 (BCB4264_A3936) ylqF 3859305..3860195 (-) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  BCB4264_RS19370 (BCB4264_A3937) lepB 3860216..3860767 (-) 552 WP_000711853.1 signal peptidase I -
  BCB4264_RS19375 (BCB4264_A3938) rplS 3860869..3861213 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  BCB4264_RS19380 (BCB4264_A3940) trmD 3861360..3862094 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BCB4264_RS19385 (BCB4264_A3941) rimM 3862094..3862609 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  BCB4264_RS19390 (BCB4264_A3942) - 3862731..3862958 (-) 228 WP_000737401.1 KH domain-containing protein -
  BCB4264_RS19395 (BCB4264_A3943) rpsP 3862973..3863245 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  BCB4264_RS19400 (BCB4264_A3944) ffh 3863347..3864696 (-) 1350 WP_000863460.1 signal recognition particle protein -
  BCB4264_RS19405 (BCB4264_A3945) - 3864709..3865041 (-) 333 WP_000891062.1 putative DNA-binding protein -
  BCB4264_RS19410 (BCB4264_A3946) ftsY 3865175..3866164 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  BCB4264_RS19415 (BCB4264_A3947) smc 3866180..3869749 (-) 3570 WP_000478970.1 chromosome segregation protein SMC -
  BCB4264_RS19420 (BCB4264_A3948) rncS 3869896..3870633 (-) 738 WP_001146875.1 ribonuclease III -
  BCB4264_RS19425 (BCB4264_A3949) acpP 3870692..3870925 (-) 234 WP_000786062.1 acyl carrier protein -
  BCB4264_RS19430 (BCB4264_A3950) fabG 3870995..3871735 (-) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  BCB4264_RS19435 (BCB4264_A3951) fabD 3871735..3872679 (-) 945 WP_000515900.1 ACP S-malonyltransferase -
  BCB4264_RS19440 (BCB4264_A3952) plsX 3872694..3873686 (-) 993 WP_000684096.1 phosphate acyltransferase PlsX -
  BCB4264_RS19445 (BCB4264_A3953) fapR 3873683..3874276 (-) 594 WP_000747348.1 transcription factor FapR -
  BCB4264_RS19450 (BCB4264_A3954) recG 3874365..3876413 (-) 2049 WP_001000813.1 ATP-dependent DNA helicase RecG -
  BCB4264_RS19455 (BCB4264_A3955) - 3876704..3878380 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  BCB4264_RS19460 (BCB4264_A3956) - 3878403..3878765 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  BCB4264_RS19465 (BCB4264_A3957) rpmB 3879142..3879330 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  BCB4264_RS19470 spoVM 3879404..3879484 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  BCB4264_RS19475 (BCB4264_A3958) - 3879551..3880231 (-) 681 WP_041184002.1 thiamine diphosphokinase -
  BCB4264_RS19480 (BCB4264_A3959) rpe 3880301..3880945 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  BCB4264_RS19485 (BCB4264_A3960) rsgA 3880948..3881829 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  BCB4264_RS19490 (BCB4264_A3961) pknB 3882076..3884049 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=32084 BCB4264_RS19315 WP_000421290.1 3847843..3848622(-) (codY) [Bacillus cereus B4264]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=32084 BCB4264_RS19315 WP_000421290.1 3847843..3848622(-) (codY) [Bacillus cereus B4264]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment