Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D9780_RS01465 Genome accession   NZ_CP033048
Coordinates   332819..333772 (+) Length   317 a.a.
NCBI ID   WP_121639025.1    Uniprot ID   -
Organism   Virgibacillus sp. Bac330     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327819..338772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9780_RS01440 - 328565..329035 (-) 471 WP_121639020.1 YcxB family protein -
  D9780_RS01445 - 329285..329587 (+) 303 WP_162985758.1 hypothetical protein -
  D9780_RS01455 - 330453..331319 (+) 867 WP_121639023.1 MBL fold metallo-hydrolase -
  D9780_RS01460 - 331745..332470 (+) 726 WP_121639024.1 DsbA family protein -
  D9780_RS01465 ceuB 332819..333772 (+) 954 WP_121639025.1 ABC transporter permease Machinery gene
  D9780_RS01470 - 333762..334712 (+) 951 WP_073006390.1 iron chelate uptake ABC transporter family permease subunit -
  D9780_RS01475 - 334706..335461 (+) 756 WP_073006391.1 ABC transporter ATP-binding protein -
  D9780_RS01480 - 335746..336708 (+) 963 WP_121639026.1 siderophore ABC transporter substrate-binding protein -
  D9780_RS01485 - 337133..337858 (+) 726 WP_121639027.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35137.53 Da        Isoelectric Point: 9.9246

>NTDB_id=320745 D9780_RS01465 WP_121639025.1 332819..333772(+) (ceuB) [Virgibacillus sp. Bac330]
MKIRYLTIILIILSFVSIFVGVSNVSPLDIFQLTEEQAKVLMVSRVPRLLSILIAGMSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSMVLFTSANPFEKMLVSFAFALLGTFAFMKILEKVKFKDAIFIPLIGLMFGNIVSSMSTFIAYRYDLI
QNISSWMQGDFSMIMTGNYELMFVSIPILIIAFFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLIIVALVTASVVLAVGM
IPFLGLIIPNIVTIYQGDHLKKSLLHTALLGAIFVLICDIIGRIIIYPYEIPISLTVGVIGSGLFIYLLFRRKKYGI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=320745 D9780_RS01465 WP_121639025.1 332819..333772(+) (ceuB) [Virgibacillus sp. Bac330]
ATGAAAATACGATATCTAACAATCATATTAATTATACTTTCCTTTGTATCTATCTTTGTTGGTGTATCAAACGTTTCTCC
GCTAGATATATTTCAGCTAACAGAGGAGCAGGCAAAAGTATTAATGGTTTCAAGAGTTCCGAGACTTTTAAGTATTTTAA
TTGCTGGTATGAGCATGAGTATTTGCGGCTTAATTATGCAACAATTAAGCAGAAATAAATTTGTATCGCCAACAACGGCA
GGAACATTGGATTCCGCCAGACTTGGAATATTAGTATCCATGGTGTTATTTACCTCTGCGAATCCATTTGAAAAGATGCT
TGTTTCTTTTGCTTTTGCTCTGTTAGGTACGTTTGCATTTATGAAGATACTGGAAAAAGTAAAATTTAAAGATGCGATAT
TCATCCCATTAATTGGTTTAATGTTTGGAAATATTGTTAGTTCCATGTCTACCTTTATTGCTTATCGTTATGATTTAATT
CAAAACATCTCGTCATGGATGCAAGGTGATTTTTCCATGATTATGACAGGGAATTACGAGCTCATGTTTGTCAGCATTCC
AATATTAATTATTGCTTTCTTTTATGCAAATAAATTTACGATTGCTGGTATGGGTGAAGATTTTTCCAAAAACCTTGGAT
TAAACTATCGACAAGTCGTCAATTTGGGTTTAATTATCGTAGCACTTGTAACCGCATCCGTTGTATTGGCAGTTGGAATG
ATTCCATTTTTAGGATTAATTATTCCTAATATTGTGACTATCTACCAAGGGGATCATTTGAAAAAAAGTTTGCTACATAC
CGCATTGTTAGGAGCCATTTTCGTTCTTATTTGTGATATTATCGGTCGAATTATTATTTATCCATATGAAATACCGATAA
GTTTAACGGTAGGGGTCATCGGTAGCGGATTATTTATTTATCTGCTCTTTAGGAGAAAAAAATATGGGATATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514

Multiple sequence alignment