Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D9Q99_RS13890 Genome accession   NZ_CP033020
Coordinates   2883943..2884572 (-) Length   209 a.a.
NCBI ID   WP_000839134.1    Uniprot ID   -
Organism   Escherichia coli ATCC 8739     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2878943..2889572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Q99_RS13875 (D9Q99_13965) helD 2879185..2881239 (-) 2055 WP_012304887.1 DNA helicase IV -
  D9Q99_RS13880 (D9Q99_13970) yccF 2881362..2881808 (+) 447 WP_001261235.1 YccF domain-containing protein -
  D9Q99_RS13885 (D9Q99_13975) yccS 2881818..2883980 (+) 2163 WP_000875061.1 YccS family putative transporter -
  D9Q99_RS13890 (D9Q99_13980) sxy/tfoX 2883943..2884572 (-) 630 WP_000839134.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D9Q99_RS13895 (D9Q99_13985) sulA 2884791..2885300 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  D9Q99_RS13900 (D9Q99_13990) ompA 2885657..2886697 (+) 1041 WP_000750416.1 porin OmpA -
  D9Q99_RS13905 (D9Q99_13995) matP 2886773..2887225 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  D9Q99_RS13910 (D9Q99_14000) ycbZ 2887411..2889171 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.98 Da        Isoelectric Point: 9.2180

>NTDB_id=320519 D9Q99_RS13890 WP_000839134.1 2883943..2884572(-) (sxy/tfoX) [Escherichia coli ATCC 8739]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAIVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=320519 D9Q99_RS13890 WP_000839134.1 2883943..2884572(-) (sxy/tfoX) [Escherichia coli ATCC 8739]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATTGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment