Detailed information NTG0320155

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4K20_RS07675
• Genome accession: NZ_CP032903
• Coordinates: 1572712..1573767 (-)
• Length: 351 a.a.
• NCBI ID: WP_139545776.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 173-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1567712..1578767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K20_RS07650	-	1568249..1569661 (-)	1413	WP_139545658.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K20_RS07655	comB10	1569731..1570867 (-)	1137	WP_139545659.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K20_RS07660	comB9	1570860..1571843 (-)	984	WP_139545660.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K20_RS07665	comB8	1571843..1572586 (-)	744	WP_139545661.1	virB8 family protein	Machinery gene
D4K20_RS07670	comB7	1572583..1572696 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4K20_RS07675	comB6	1572712..1573767 (-)	1056	WP_139545776.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K20_RS07680	-	1573775..1574770 (-)	996	WP_139545777.1	PDZ domain-containing protein	-
D4K20_RS07685	-	1574770..1575063 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4K20_RS07690	panD	1575074..1575424 (-)	351	WP_000142269.1	aspartate 1-decarboxylase	-
D4K20_RS07695	-	1575414..1577639 (-)	2226	WP_139545662.1	ATP-dependent Clp protease ATP-binding subunit	-
D4K20_RS07700	-	1577639..1577914 (-)	276	WP_000784906.1	ATP-dependent Clp protease adaptor ClpS	-
D4K20_RS07705	-	1577937..1578350 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39743.76 Da
• Isoelectric Point: 8.5765

>NTDB_id=320155 D4K20_RS07675 WP_139545776.1 1572712..1573767(-) (comB6) [Helicobacter pylori strain 173-A-EK1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKAWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALSSLQYTTISPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320155 D4K20_RS07675 WP_139545776.1 1572712..1573767(-) (comB6) [Helicobacter pylori strain 173-A-EK1]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTCATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGTGCAATTGGTGTTTAACAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTCAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAGCCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCTAGTATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGAGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTAGTTCCTTACAATATACCA
CAATCTCGCCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterProScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963