Detailed information NTG0319840

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D9C20_RS18840
• Genome accession: NZ_CP032867
• Coordinates: 3544795..3545574 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain N4-2
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3539795..3550574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C20_RS18820 (D9C20_18820)	trmFO	3540488..3541795 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
D9C20_RS18825 (D9C20_18825)	xerC	3541863..3542777 (+)	915	WP_014479777.1	tyrosine recombinase XerC	-
D9C20_RS18830 (D9C20_18830)	clpQ	3542790..3543335 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
D9C20_RS18835 (D9C20_18835)	hslU	3543352..3544755 (+)	1404	WP_014476801.1	HslU--HslV peptidase ATPase subunit	-
D9C20_RS18840 (D9C20_18840)	codY	3544795..3545574 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D9C20_RS18845 (D9C20_18845)	flgB	3545954..3546343 (+)	390	WP_014479778.1	flagellar basal body rod protein FlgB	-
D9C20_RS18850 (D9C20_18850)	flgC	3546343..3546795 (+)	453	WP_014479779.1	flagellar basal body rod protein FlgC	-
D9C20_RS18855 (D9C20_18855)	fliE	3546806..3547126 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
D9C20_RS18860 (D9C20_18860)	fliF	3547172..3548769 (+)	1598	Protein_3636	flagellar basal-body MS-ring/collar protein FliF	-
D9C20_RS18865 (D9C20_18865)	fliG	3548782..3549798 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
D9C20_RS18870 (D9C20_18870)	fliH	3549791..3550543 (+)	753	WP_014479782.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=319840 D9C20_RS18840 WP_003220850.1 3544795..3545574(+) (codY) [Bacillus subtilis subsp. subtilis strain N4-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=319840 D9C20_RS18840 WP_003220850.1 3544795..3545574(+) (codY) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467