Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   D9C14_RS05595 Genome accession   NZ_CP032860
Coordinates   1076242..1076583 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1071242..1081583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS05580 (D9C14_05580) hepAB 1071483..1074251 (+) 2769 WP_038427969.1 DEAD/DEAH box helicase -
  D9C14_RS05585 (D9C14_05585) ywpJ 1074379..1075236 (-) 858 WP_038427970.1 phosphatase YwpJ -
  D9C14_RS05590 (D9C14_05590) glcR 1075242..1076018 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  D9C14_RS05595 (D9C14_05595) ssbB 1076242..1076583 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  D9C14_RS05600 (D9C14_05600) ywpG 1076660..1077043 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  D9C14_RS05605 (D9C14_05605) ywpF 1077218..1077628 (+) 411 WP_003227794.1 YwpF-like family protein -
  D9C14_RS05610 (D9C14_05610) - 1077768..1078160 (-) 393 Protein_1090 class A sortase -
  D9C14_RS05615 (D9C14_05615) ywpD 1078420..1079256 (+) 837 WP_038428160.1 histidine kinase -
  D9C14_RS05620 (D9C14_05620) mscL 1079303..1079698 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  D9C14_RS05625 (D9C14_05625) fabZ 1079771..1080196 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  D9C14_RS05630 (D9C14_05630) rapD 1080388..1081452 (+) 1065 WP_015714847.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=319469 D9C14_RS05595 WP_014478203.1 1076242..1076583(-) (ssbB) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=319469 D9C14_RS05595 WP_014478203.1 1076242..1076583(-) (ssbB) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment