Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   D9C11_RS08640 Genome accession   NZ_CP032855
Coordinates   1599609..1599950 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1594609..1604950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS08620 (D9C11_08620) hepAB 1594851..1597619 (+) 2769 WP_014481139.1 DEAD/DEAH box helicase -
  D9C11_RS08630 (D9C11_08630) ywpJ 1597745..1598602 (-) 858 WP_041334769.1 phosphatase YwpJ -
  D9C11_RS08635 (D9C11_08635) glcR 1598608..1599384 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  D9C11_RS08640 (D9C11_08640) ssbB 1599609..1599950 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  D9C11_RS08645 (D9C11_08645) ywpG 1600027..1600409 (-) 383 Protein_1689 DynA interaction protein YwpG -
  D9C11_RS08650 (D9C11_08650) ywpF 1600584..1600994 (+) 411 WP_014481144.1 YwpF-like family protein -
  D9C11_RS08655 (D9C11_08655) - 1601134..1601526 (-) 393 Protein_1691 class A sortase -
  D9C11_RS24385 - 1601693..1601857 (-) 165 Protein_1692 hypothetical protein -
  D9C11_RS08665 (D9C11_08665) ywpD 1601786..1602622 (+) 837 WP_250621996.1 histidine kinase -
  D9C11_RS08670 (D9C11_08670) mscL 1602670..1603065 (-) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  D9C11_RS08675 (D9C11_08675) fabZ 1603138..1603563 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  D9C11_RS08680 (D9C11_08680) rapD 1603755..1604819 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=319330 D9C11_RS08640 WP_003227798.1 1599609..1599950(-) (ssbB) [Bacillus subtilis subsp. subtilis strain PJ-7]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=319330 D9C11_RS08640 WP_003227798.1 1599609..1599950(-) (ssbB) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment