Detailed information NTG0319181

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D9C09_RS12865
• Genome accession: NZ_CP032852
• Coordinates: 2462445..2463224 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain GFR-12
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2457445..2468224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C09_RS12845 (D9C09_12845)	trmFO	2458138..2459445 (+)	1308	WP_069837510.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
D9C09_RS12850 (D9C09_12850)	xerC	2459513..2460427 (+)	915	WP_014479777.1	tyrosine recombinase XerC	-
D9C09_RS12855 (D9C09_12855)	clpQ	2460440..2460985 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
D9C09_RS12860 (D9C09_12860)	hslU	2461002..2462405 (+)	1404	WP_014476801.1	HslU--HslV peptidase ATPase subunit	-
D9C09_RS12865 (D9C09_12865)	codY	2462445..2463224 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D9C09_RS12870 (D9C09_12870)	flgB	2463604..2463993 (+)	390	WP_014479778.1	flagellar basal body rod protein FlgB	-
D9C09_RS12875 (D9C09_12875)	flgC	2463993..2464445 (+)	453	WP_014479779.1	flagellar basal body rod protein FlgC	-
D9C09_RS12880 (D9C09_12880)	fliE	2464456..2464776 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
D9C09_RS12885 (D9C09_12885)	fliF	2464822..2466432 (+)	1611	WP_046160402.1	flagellar basal-body MS-ring/collar protein FliF	-
D9C09_RS12890 (D9C09_12890)	fliG	2466445..2467461 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
D9C09_RS12895 (D9C09_12895)	fliH	2467454..2468206 (+)	753	WP_014479782.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=319181 D9C09_RS12865 WP_003220850.1 2462445..2463224(+) (codY) [Bacillus subtilis subsp. subtilis strain GFR-12]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=319181 D9C09_RS12865 WP_003220850.1 2462445..2463224(+) (codY) [Bacillus subtilis subsp. subtilis strain GFR-12]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467