Detailed information NTG0317744

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: E8M03_RS08820
• Genome accession: NZ_CP039448
• Coordinates: 1769492..1770178 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain VGC1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1764492..1775178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E8M03_RS08775 (E8M03_08865)	rpmA	1765263..1765547 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
E8M03_RS08780 (E8M03_08870)	-	1765559..1765879 (-)	321	WP_000633690.1	ribosomal-processing cysteine protease Prp	-
E8M03_RS08785 (E8M03_08875)	rplU	1765885..1766193 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
E8M03_RS08790 (E8M03_08880)	mreD	1766429..1766959 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
E8M03_RS08795 (E8M03_08885)	mreC	1766959..1767801 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
E8M03_RS08800 (E8M03_08890)	-	1768000..1768119 (-)	120	WP_000840603.1	hypothetical protein	-
E8M03_RS08805 (E8M03_08895)	-	1768193..1768666 (-)	474	WP_001236737.1	DUF4930 family protein	-
E8M03_RS08810 (E8M03_08900)	-	1768826..1769023 (+)	198	WP_000025835.1	hypothetical protein	-
E8M03_RS08815 (E8M03_08905)	-	1769140..1769424 (-)	285	WP_000171863.1	hypothetical protein	-
E8M03_RS08820 (E8M03_08910)	ysxA/radC	1769492..1770178 (-)	687	WP_000692876.1	DNA repair protein RadC	Machinery gene
E8M03_RS08825 (E8M03_08915)	-	1770175..1770882 (-)	708	WP_000261111.1	A24 family peptidase	-
E8M03_RS08830 (E8M03_08925)	-	1771150..1772421 (-)	1272	WP_001108341.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
E8M03_RS08835 (E8M03_08930)	-	1772434..1775064 (-)	2631	WP_000425338.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=317744 E8M03_RS08820 WP_000692876.1 1769492..1770178(-) (ysxA/radC) [Staphylococcus aureus strain VGC1]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=317744 E8M03_RS08820 WP_000692876.1 1769492..1770178(-) (ysxA/radC) [Staphylococcus aureus strain VGC1]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377