Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DZA58_RS14855 Genome accession   NZ_CP032444
Coordinates   2864076..2864681 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2859076..2869681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZA58_RS14840 (DZA58_14840) helD 2859293..2861347 (-) 2055 WP_109187897.1 DNA helicase IV -
  DZA58_RS14845 (DZA58_14845) - 2861471..2861917 (+) 447 WP_001261222.1 YccF domain-containing protein -
  DZA58_RS14850 (DZA58_14850) yccS 2861936..2864089 (+) 2154 WP_001726973.1 YccS family putative transporter -
  DZA58_RS14855 (DZA58_14855) sxy/tfoX 2864076..2864681 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  DZA58_RS14860 (DZA58_14860) sulA 2864898..2865407 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  DZA58_RS14865 (DZA58_14865) ompA 2865764..2866816 (+) 1053 WP_001670727.1 porin OmpA -
  DZA58_RS14870 (DZA58_14870) matP 2866882..2867340 (-) 459 WP_119766269.1 macrodomain Ter protein MatP -
  DZA58_RS14875 (DZA58_14875) - 2867526..2869286 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=315912 DZA58_RS14855 WP_001202375.1 2864076..2864681(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=315912 DZA58_RS14855 WP_001202375.1 2864076..2864681(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment